Package tech.molecules.leet.table.chart

Class JFreeChartScatterPlot

java.lang.Object

java.awt.Component

java.awt.Container

javax.swing.JComponent

javax.swing.JPanel

tech.molecules.leet.table.chart.JFreeChartScatterPlot

All Implemented Interfaces:

ImageObserver, MenuContainer, Serializable, Accessible

public class JFreeChartScatterPlot
extends JPanel

Provides synchronization in between NexusTableModel and scatter plot. Data can be provided in different ways into the plot. First option is, to have fixed x/y coordinates for every row in the dataset.

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	JFreeChartScatterPlot.LASSO_STATE
class	JFreeChartScatterPlot.LassoMouseListener
static class	JFreeChartScatterPlot.NumericalDatasourceKeyedDataset<U>
static interface	JFreeChartScatterPlot.ScatterPlotListener
class	JFreeChartScatterPlot.SetClusteringAnnotationsAction
class	JFreeChartScatterPlot.SetColoringAction
class	JFreeChartScatterPlot.SetColormapAction

Nested classes/interfaces inherited from class javax.swing.JPanel

JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields inherited from class javax.swing.JComponent

listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

accessibleContext, BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors

Constructor	Description
JFreeChartScatterPlot(NexusTableModel ntm, org.jfree.data.general.KeyedValuesDataset x, org.jfree.data.general.KeyedValuesDataset y)
JFreeChartScatterPlot(NexusTableModel ntm, NumericalDatasource nd_x, NumericalDatasource nd_y)

Method Summary

Modifier and Type	Method	Description
void	addScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener li)
Map<String,Double>	getHighlightMap(Collection<String> highlight)
Map<String,Double>	getHighlightMap(org.jfree.chart.entity.EntityCollection entityCollection, org.jfree.chart.entity.EntityCollection toHighlight)
int	getIndexForKey(String key)
String	getKeyForIndex(int i)
String	getKeyForXYEntity(org.jfree.chart.entity.XYItemEntity entity)
static org.jfree.chart.entity.EntityCollection	getNNearestEntities(org.jfree.chart.entity.EntityCollection entityCollection, int px, int py, int n)
double[]	getPositionOfKey(String ski)
static double[]	java2dToChart(org.jfree.chart.ChartPanel cp, org.jfree.chart.plot.XYPlot plot, double px, double py)
void	removeScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener li)
void	setColor(org.jfree.data.general.DefaultKeyedValuesDataset data_color)
void	setColoringByNexusColumn(NColumn nc)
void	setColormap(net.mahdilamb.colormap.Colormap colormap)
void	setColorValues(Map<String,Double> col)
void	setContextMenu(JPopupMenu jpop)
void	setHighlight(Set<String> highlight, boolean fireEvent)
void	setHighlightNNearestNeighbors(int n)	set to -1 to deactivate
void	setMultipleAnnotations(Map<String,List<Integer>> classes, Map<Integer,Paint> paints)
void	setSelection(Set<String> selection)	Note: calling this method does NOT fire any events in ClusterAppModel
void	updatePlot()

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

JFreeChartScatterPlot

public JFreeChartScatterPlot(NexusTableModel ntm,
                             org.jfree.data.general.KeyedValuesDataset x,
                             org.jfree.data.general.KeyedValuesDataset y)

JFreeChartScatterPlot

public JFreeChartScatterPlot(NexusTableModel ntm,
                             NumericalDatasource nd_x,
                             NumericalDatasource nd_y)

Method Detail

setColor

public void setColor(org.jfree.data.general.DefaultKeyedValuesDataset data_color)

setColormap

public void setColormap(net.mahdilamb.colormap.Colormap colormap)

getPositionOfKey

public double[] getPositionOfKey(String ski)

setSelection

public void setSelection(Set<String> selection)

Note: calling this method does NOT fire any events in ClusterAppModel

Parameters:

selection -

setHighlight

public void setHighlight(Set<String> highlight,
                         boolean fireEvent)

setMultipleAnnotations

public void setMultipleAnnotations(Map<String,List<Integer>> classes,
                                   Map<Integer,Paint> paints)

Parameters:

classes -

paints -

setColorValues

public void setColorValues(Map<String,Double> col)

getKeyForIndex

public String getKeyForIndex(int i)

getIndexForKey

public int getIndexForKey(String key)

setColoringByNexusColumn

public void setColoringByNexusColumn(NColumn nc)

setContextMenu

public void setContextMenu(JPopupMenu jpop)

getKeyForXYEntity

public String getKeyForXYEntity(org.jfree.chart.entity.XYItemEntity entity)

updatePlot

public void updatePlot()

setHighlightNNearestNeighbors

public void setHighlightNNearestNeighbors(int n)

set to -1 to deactivate

Parameters:

n -

java2dToChart

public static double[] java2dToChart(org.jfree.chart.ChartPanel cp,
                                     org.jfree.chart.plot.XYPlot plot,
                                     double px,
                                     double py)

getHighlightMap

public Map<String,Double> getHighlightMap(Collection<String> highlight)

getHighlightMap

public Map<String,Double> getHighlightMap(org.jfree.chart.entity.EntityCollection entityCollection,
                                                org.jfree.chart.entity.EntityCollection toHighlight)

getNNearestEntities

public static org.jfree.chart.entity.EntityCollection getNNearestEntities(org.jfree.chart.entity.EntityCollection entityCollection,
                                                                          int px,
                                                                          int py,
                                                                          int n)

addScatterPlotListener

public void addScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener li)

removeScatterPlotListener

public void removeScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener li)