Package tech.molecules.leet.table

Class PairwiseDistanceColumn

java.lang.Object

tech.molecules.leet.table.PairwiseDistanceColumn

All Implemented Interfaces:

NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>, NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

public class PairwiseDistanceColumn
extends Object
implements NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

Nested Class Summary

Nested classes/interfaces inherited from interface tech.molecules.leet.table.NColumn

NColumn.CellSpecificAction, NColumn.ColumnDataListener, NColumn.NexusRowFilter<U>

Constructor Summary

Constructors

Constructor	Description
PairwiseDistanceColumn(Map<String,Integer> row_pos, double[][] distances, boolean isSimilarity, boolean isNormalized, boolean isSymmetric)

Method Summary

Modifier and Type	Method	Description
void	addCellPopupAction(NColumn.CellSpecificAction ca)
void	addColumnDataListener(NColumn.ColumnDataListener cdl)
static PairwiseDistanceColumn	createFromDescriptor(NDataProvider.StructureDataProvider data, com.actelion.research.chem.descriptor.DescriptorHandler dh, List<String> rows)
NColumn.NexusRowFilter<NDataProvider.StructureDataProvider>	createRowFilter(NexusTableModel tableModel, String name)	NOTE: There are columns that have different row filters available depending on the colunn configuration.
double	evaluateValue(NDataProvider.StructureDataProvider data, String rowid_a, String rowid_b)
TableCellEditor	getCellEditor()
com.actelion.research.chem.StereoMolecule	getData(String rowid)
NDataProvider.StructureDataProvider	getDataProvider()
String	getName()
Map<String,NumericalDatasource<NDataProvider.StructureDataProvider>>	getNumericalDataSources()
List<String>	getRowFilterTypes()	NOTE: There are columns that have different row filters available depending on the colunn configuration.
boolean	isNormalized()	If value is always in between 0 and 1.
boolean	isSimilarity()	true for similarity, false for distance
boolean	isSymmetric()
boolean	removeColumnDataListener(NColumn.ColumnDataListener cdl)
void	setDataProvider(NDataProvider.StructureDataProvider dataprovider)
void	startAsyncReinitialization(NexusTableModel model)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface tech.molecules.leet.table.NColumn

getClassifications

Constructor Detail

PairwiseDistanceColumn

public PairwiseDistanceColumn(Map<String,Integer> row_pos,
                              double[][] distances,
                              boolean isSimilarity,
                              boolean isNormalized,
                              boolean isSymmetric)

Method Detail

getName

public String getName()

Specified by:

getName in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

setDataProvider

public void setDataProvider(NDataProvider.StructureDataProvider dataprovider)

Specified by:

setDataProvider in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

getDataProvider

public NDataProvider.StructureDataProvider getDataProvider()

Specified by:

getDataProvider in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

startAsyncReinitialization

public void startAsyncReinitialization(NexusTableModel model)

Specified by:

startAsyncReinitialization in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

getData

public com.actelion.research.chem.StereoMolecule getData(String rowid)

Specified by:

getData in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

getCellEditor

public TableCellEditor getCellEditor()

Specified by:

getCellEditor in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

getNumericalDataSources

public Map<String,NumericalDatasource<NDataProvider.StructureDataProvider>> getNumericalDataSources()

Specified by:

getNumericalDataSources in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

addCellPopupAction

public void addCellPopupAction(NColumn.CellSpecificAction ca)

Specified by:

addCellPopupAction in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

getRowFilterTypes

public List<String> getRowFilterTypes()

Description copied from interface: NColumn

NOTE: There are columns that have different row filters available depending on the colunn configuration. For these, the call to getRowFilterTypes() initializes the currently available filters. I.e. to create a filter, it is necessary to call getRowFilterTypes() before.

Specified by:

getRowFilterTypes in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

Returns:

createRowFilter

public NColumn.NexusRowFilter<NDataProvider.StructureDataProvider> createRowFilter(NexusTableModel tableModel,
                                                                                   String name)

Description copied from interface: NColumn

NOTE: There are columns that have different row filters available depending on the colunn configuration. For these, the call to getRowFilterTypes() initializes the currently available filters. I.e. to create a filter, it is necessary to call getRowFilterTypes() before.

Specified by:

createRowFilter in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

Returns:

addColumnDataListener

public void addColumnDataListener(NColumn.ColumnDataListener cdl)

Specified by:

addColumnDataListener in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

removeColumnDataListener

public boolean removeColumnDataListener(NColumn.ColumnDataListener cdl)

Specified by:

removeColumnDataListener in interface NColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

isSimilarity

public boolean isSimilarity()

Description copied from interface: NSimilarityColumn

true for similarity, false for distance

Specified by:

isSimilarity in interface NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

Returns:

isNormalized

public boolean isNormalized()

Description copied from interface: NSimilarityColumn

If value is always in between 0 and 1.

Specified by:

isNormalized in interface NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

Returns:

isSymmetric

public boolean isSymmetric()

Specified by:

isSymmetric in interface NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

evaluateValue

public double evaluateValue(NDataProvider.StructureDataProvider data,
                            String rowid_a,
                            String rowid_b)

Specified by:

evaluateValue in interface NSimilarityColumn<NDataProvider.StructureDataProvider,com.actelion.research.chem.StereoMolecule>

createFromDescriptor

public static PairwiseDistanceColumn createFromDescriptor(NDataProvider.StructureDataProvider data,
                                                          com.actelion.research.chem.descriptor.DescriptorHandler dh,
                                                          List<String> rows)