Package tech.molecules.leet.clustering

Class ClusterAppModel

java.lang.Object

tech.molecules.leet.clustering.ClusterAppModel

All Implemented Interfaces:

NClassification, NDataProvider, NDataProvider.ClassificationProvider, NDataProvider.NClassificationProvider, NDataProvider.StructureDataProvider

public class ClusterAppModel
extends Object
implements NDataProvider.StructureDataProvider, NClassification, NDataProvider.NClassificationProvider

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
class	ClusterAppModel.AddMembersToClusterAction
class	ClusterAppModel.Cluster
static interface	ClusterAppModel.ClusterAppModelListener
static class	ClusterAppModel.ClusterHandlingException
class	ClusterAppModel.ClusterListModel
class	ClusterAppModel.ClusterTableModel
class	ClusterAppModel.CreateClusterAction
class	ClusterAppModel.CreateClusterFromCellAction
class	ClusterAppModel.CreateClusterFromSelectedCellsAction

Nested classes/interfaces inherited from interface tech.molecules.leet.table.NClassification

NClassification.ClassificationListener, NClassification.ClassificationTableModel, NClassification.NClass, NClassification.NClassWithTimestamp

Nested classes/interfaces inherited from interface tech.molecules.leet.table.NDataProvider

NDataProvider.ClassificationDataProvider, NDataProvider.ClassificationProvider<C extends NClassification>, NDataProvider.MultiNumericDataProvider, NDataProvider.NClassificationProvider<C extends NClassification>, NDataProvider.NMultiNumericDataProvider, NDataProvider.NStringDataProvider, NDataProvider.StringDataProvider, NDataProvider.StructureDataProvider, NDataProvider.StructureDataProviderFromColumn<U>, NDataProvider.StructureWithID

Field Summary

Fields

Modifier and Type	Field	Description
static String	CLUSTER_FLAG_DEFINING

Constructor Summary

Constructors

Constructor	Description
ClusterAppModel(NexusTableModel ntm, NStructureDataProvider dsp)

Method Summary

Modifier and Type	Method	Description
void	addClass(NClassification.NClass ci)
void	addClassificationListener(NClassification.ClassificationListener li)
void	addClusterAppModelListener(ClusterAppModel.ClusterAppModelListener li)
ClusterAppModel.Cluster	createCluster(String name, Color color, List<String> ids)
List<NClassification.NClass>	getClasses()
List<NClassification.NClass>	getClassesForRow(String id)
NClassification	getClassification()
ClassificationColumn	getClassificationColumn()
ClusterAppModel.Cluster	getClusterByName(String c)
Map<String,List<Color>>	getClusterColoring()
ClusterAppModel.ClusterListModel	getClusterListModel()
List<ClusterAppModel.Cluster>	getClusters()
ClusterAppModel.ClusterTableModel	getClusterTableModel()
List<String>	getHighlighted()
NexusTableModel	getNtm()
List<String>	getSelection()
NDataProvider.StructureWithID	getStructureData(String rowid)
NStructureDataProvider	getStructureProvider()
void	init(NexusTableModel ntm)
void	removeClass(NClassification.NClass ci)
void	removeClassificationListener(NClassification.ClassificationListener li)
void	removeClusterAppModelListener(ClusterAppModel.ClusterAppModelListener li)
void	setHighlighted(List<String> s)
void	setSelection(List<String> s)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CLUSTER_FLAG_DEFINING

public static final String CLUSTER_FLAG_DEFINING

See Also:

Constant Field Values

Constructor Detail

ClusterAppModel

public ClusterAppModel(NexusTableModel ntm,
                       NStructureDataProvider dsp)

Method Detail

getStructureData

public NDataProvider.StructureWithID getStructureData(String rowid)

Specified by:

getStructureData in interface NDataProvider.StructureDataProvider

getClassification

public NClassification getClassification()

Specified by:

getClassification in interface NDataProvider.ClassificationProvider

getClasses

public List<NClassification.NClass> getClasses()

Specified by:

getClasses in interface NClassification

addClass

public void addClass(NClassification.NClass ci)

Specified by:

addClass in interface NClassification

removeClass

public void removeClass(NClassification.NClass ci)

Specified by:

removeClass in interface NClassification

addClassificationListener

public void addClassificationListener(NClassification.ClassificationListener li)

Specified by:

addClassificationListener in interface NClassification

removeClassificationListener

public void removeClassificationListener(NClassification.ClassificationListener li)

Specified by:

removeClassificationListener in interface NClassification

getClassesForRow

public List<NClassification.NClass> getClassesForRow(String id)

Specified by:

getClassesForRow in interface NClassification

init

public void init(NexusTableModel ntm)

setSelection

public void setSelection(List<String> s)

setHighlighted

public void setHighlighted(List<String> s)

getHighlighted

public List<String> getHighlighted()

getStructureProvider

public NStructureDataProvider getStructureProvider()

getClassificationColumn

public ClassificationColumn getClassificationColumn()

getNtm

public NexusTableModel getNtm()

getClusters

public List<ClusterAppModel.Cluster> getClusters()

getSelection

public List<String> getSelection()

getClusterColoring

public Map<String,List<Color>> getClusterColoring()

createCluster

public ClusterAppModel.Cluster createCluster(String name,
                                             Color color,
                                             List<String> ids)
                                      throws ClusterAppModel.ClusterHandlingException

Throws:

ClusterAppModel.ClusterHandlingException

getClusterByName

public ClusterAppModel.Cluster getClusterByName(String c)

addClusterAppModelListener

public void addClusterAppModelListener(ClusterAppModel.ClusterAppModelListener li)

removeClusterAppModelListener

public void removeClusterAppModelListener(ClusterAppModel.ClusterAppModelListener li)

getClusterListModel

public ClusterAppModel.ClusterListModel getClusterListModel()

getClusterTableModel

public ClusterAppModel.ClusterTableModel getClusterTableModel()