A B C D E F G H I J L M N O P R S T U V W X Y
All Classes All Packages

A

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.clustering.action.CreateClusteringToolAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.clustering.ClusterAppModel.AddMembersToClusterAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterFromCellAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterFromSelectedCellsAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetClusteringAnnotationsAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetColoringAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetColormapAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.SetClusteringAnnotationsAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.SetColorNumericalDatasource

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.SetPointSizeAction

actionPerformed(ActionEvent) - Method in class tech.molecules.leet.table.io.JDWARImportPanel.DWARImportAction

addCellPopupAction(NColumn.CellSpecificAction) - Method in class tech.molecules.leet.table.ClassificationColumn

addCellPopupAction(NColumn.CellSpecificAction) - Method in interface tech.molecules.leet.table.NColumn

addCellPopupAction(NColumn.CellSpecificAction) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

addChangeListener(ChangeListener) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

addChangeListener(DatasetChangeListener) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

addChangeListener(DatasetChangeListener) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

addClass(NClassification.NClass) - Method in class tech.molecules.leet.clustering.ClusterAppModel

addClass(NClassification.NClass) - Method in class tech.molecules.leet.table.DefaultClustering

addClass(NClassification.NClass) - Method in interface tech.molecules.leet.table.NClassification

addClassificationListener(NClassification.ClassificationListener) - Method in class tech.molecules.leet.clustering.ClusterAppModel

addClassificationListener(NClassification.ClassificationListener) - Method in class tech.molecules.leet.table.DefaultClustering

addClassificationListener(NClassification.ClassificationListener) - Method in interface tech.molecules.leet.table.NClassification

addClusterAppModelListener(ClusterAppModel.ClusterAppModelListener) - Method in class tech.molecules.leet.clustering.ClusterAppModel

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.ClassificationColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in interface tech.molecules.leet.table.NColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StringColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

addColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StructureColumn

addFilter(NColumn.NexusRowFilter) - Method in class tech.molecules.leet.table.gui.JFilterPanel

addMembers(Collection<String>) - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

AddMembersToClusterAction(String, Supplier<List<String>>, String) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.AddMembersToClusterAction

addModel(ScatterPlotModel) - Method in class tech.molecules.leet.table.chart.JScatterPlotConfigurationMenuBar

addModelListener(JStructureSelectionPanel.StructureSelectionModel.ModelListener) - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel

addNexusColumn(NDataProvider, NColumn) - Method in class tech.molecules.leet.table.NexusTableModel

addNexusListener(NexusTableModel.NexusTableModelListener) - Method in class tech.molecules.leet.table.NexusTableModel

addPoint(double, double) - Method in class tech.molecules.leet.table.chart.JFreeChartPlotLasso

Adds a point to the polygon

addRowFilter(NColumn<U, T>, NColumn.NexusRowFilter<T>) - Method in class tech.molecules.leet.table.NexusTableModel

addScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

addScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

addSelectionListener(JNumericalDataSourceSelector.SelectionListener) - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

addSelectionTypeToRows(NexusTableModel.SelectionType, Collection<String>) - Method in class tech.molecules.leet.table.NexusTableModel

autoconfigure_A() - Method in class tech.molecules.leet.table.io.JDWARImportPanel

B

batchid - Variable in class tech.molecules.leet.table.NDataProvider.StructureWithID

C

CachedDescriptorSimilarityProvider - Class in tech.molecules.leet.table

CachedDescriptorSimilarityProvider(String) - Constructor for class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

CalcPropertiesRenderer() - Constructor for class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer

CalculatedProperties(Map<Integer, Integer>) - Constructor for class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalculatedProperties

canParse(String) - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

canParse(String) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

canParse(String) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

canParse(String) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

CellSpecificAction(String, NColumn, Supplier<List<String>>) - Constructor for class tech.molecules.leet.table.NColumn.CellSpecificAction

chartMouseClicked(ChartMouseEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.LassoMouseListener

chartMouseMoved(ChartMouseEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.LassoMouseListener

ChemPropertyCountDatasource(ChemPropertyCounts.ChemPropertyCount) - Constructor for class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource

CircleDrawer - Class in tech.molecules.leet.table.chart

An implementation of the Drawable interface, to illustrate the use of the XYDrawableAnnotation class.

CircleDrawer(Paint, Stroke, Paint) - Constructor for class tech.molecules.leet.table.chart.CircleDrawer

Creates a new instance.

classChanged(NClassification.NClass) - Method in interface tech.molecules.leet.table.NClassification.ClassificationListener

classificationChanged() - Method in interface tech.molecules.leet.table.NClassification.ClassificationListener

ClassificationColumn - Class in tech.molecules.leet.table

ClassificationColumn(NClassification) - Constructor for class tech.molecules.leet.table.ClassificationColumn

ClassificationColumn.ClassificationRenderer - Class in tech.molecules.leet.table

ClassificationColumn.JColorLabel - Class in tech.molecules.leet.table

ClassificationRenderer() - Constructor for class tech.molecules.leet.table.ClassificationColumn.ClassificationRenderer

ClassificationTableModel(NClassification) - Constructor for class tech.molecules.leet.table.NClassification.ClassificationTableModel

close() - Method in class tech.molecules.leet.table.chart.JFreeChartPlotLasso

Cluster(String, String, Color, Collection<String>) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.Cluster

Cluster(String, String, Collection<String>) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.Cluster

CLUSTER_FLAG_DEFINING - Static variable in class tech.molecules.leet.clustering.ClusterAppModel

ClusterAppModel - Class in tech.molecules.leet.clustering

ClusterAppModel(NexusTableModel, NStructureDataProvider) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel

ClusterAppModel.AddMembersToClusterAction - Class in tech.molecules.leet.clustering

ClusterAppModel.Cluster - Class in tech.molecules.leet.clustering

ClusterAppModel.ClusterAppModelListener - Interface in tech.molecules.leet.clustering

ClusterAppModel.ClusterHandlingException - Exception in tech.molecules.leet.clustering

ClusterAppModel.ClusterListModel - Class in tech.molecules.leet.clustering

ClusterAppModel.ClusterTableModel - Class in tech.molecules.leet.clustering

ClusterAppModel.CreateClusterAction - Class in tech.molecules.leet.clustering

ClusterAppModel.CreateClusterFromCellAction - Class in tech.molecules.leet.clustering

ClusterAppModel.CreateClusterFromSelectedCellsAction - Class in tech.molecules.leet.clustering

ClusterHandlingException(String) - Constructor for exception tech.molecules.leet.clustering.ClusterAppModel.ClusterHandlingException

ClusterListModel() - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.ClusterListModel

clustersChanged() - Method in interface tech.molecules.leet.clustering.ClusterAppModel.ClusterAppModelListener

ClusterTableModel() - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

collectNumericDataSources() - Method in class tech.molecules.leet.table.NexusTableModel

ColorMapHelper - Class in tech.molecules.leet.util

ColorMapHelper() - Constructor for class tech.molecules.leet.util.ColorMapHelper

ColorMapHelper.PaintScaleFromColormap - Class in tech.molecules.leet.util

ColorMapHelper.SpectrumPaintScale - Class in tech.molecules.leet.util

ColorRenderer(boolean) - Constructor for class tech.molecules.leet.table.gui.JSimpleClusterView.ColorRenderer

CombinedKeyedXYDataset(KeyedValuesDataset, KeyedValuesDataset) - Constructor for class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

CombinedKeyedXYZDataset(KeyedValuesDataset, KeyedValuesDataset, KeyedValuesDataset) - Constructor for class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

computeUMap(String[], double[][]) - Static method in class tech.molecules.leet.similarity.UMapHelper

counts - Variable in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalculatedProperties

indeces are positions in ChemPropertyCounts.COUNTS_ALL

createArmedVersion(String, Supplier<List<String>>) - Method in class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterFromCellAction

createArmedVersion(String, Supplier<List<String>>) - Method in class tech.molecules.leet.table.NColumn.CellSpecificAction

createChart(NexusTableModel, UMapHelper.UMapXYChartConfig) - Static method in class tech.molecules.leet.similarity.UMapHelper

createChart(NexusTableModel, XYChartCreator.XYChartConfig) - Static method in class tech.molecules.leet.table.chart.XYChartCreator

createChart2() - Static method in class tech.molecules.leet.table.chart.XYChartCreator

createChart2(NexusTableModel, UMapHelper.UMapXYChartConfig) - Static method in class tech.molecules.leet.similarity.UMapHelper

createCluster(String, Color, List<String>) - Method in class tech.molecules.leet.clustering.ClusterAppModel

CreateClusterAction(String, Supplier<Pair<String, Color>>, Supplier<List<String>>) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterAction

CreateClusterFromCellAction(String, NColumn, Supplier<List<String>>) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterFromCellAction

CreateClusterFromSelectedCellsAction(String) - Constructor for class tech.molecules.leet.clustering.ClusterAppModel.CreateClusterFromSelectedCellsAction

CreateClusteringToolAction - Class in tech.molecules.leet.clustering.action

CreateClusteringToolAction(String, NexusTableModel, NStructureDataProvider, JPanel) - Constructor for class tech.molecules.leet.clustering.action.CreateClusteringToolAction

createDataset() - Method in class tech.molecules.leet.histogram.JHistogramPanel

createFromDescriptor(NDataProvider.StructureDataProvider, DescriptorHandler, List<String>) - Static method in class tech.molecules.leet.table.PairwiseDistanceColumn

createInteractiveEditorInfrastructure(int) - Method in class tech.molecules.leet.table.NexusTable

For creating interactive editors it is necessary to dispatch MousePressed events also to the supplied function dispatchMousePressedEvent(..)!!

createPlots() - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

createPopupMenuForStructureGridPanel(ClusterAppModel, JStructureGridPanel) - Static method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel

createRandomColor() - Static method in class tech.molecules.leet.util.ColorMapHelper

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.ClassificationColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

createRowFilter(NexusTableModel, String) - Method in interface tech.molecules.leet.table.NColumn

NOTE: There are columns that have different row filters available depending on the colunn configuration.

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.StringColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

createRowFilter(NexusTableModel, String) - Method in class tech.molecules.leet.table.StructureColumn

CreateXYScatterPlotAction - Class in tech.molecules.leet.table.action

CreateXYScatterPlotAction(NexusTableModel, Supplier<JPanel>, Frame) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotAction

CreateXYScatterPlotActionConfig - Class in tech.molecules.leet.table.action

CreateXYScatterPlotActionConfig(JPanel, NDataProvider, NDataProvider, NDataProvider, NumericalDatasource, NumericalDatasource, NumericalDatasource) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

CreateXYScatterPlotActionConfig(JPanel, NDataProvider, NDataProvider, NumericalDatasource, NumericalDatasource) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

CreateXYScatterPlotActionGUI - Class in tech.molecules.leet.table.action

CreateXYScatterPlotActionGUI(CreateXYScatterPlotActionModel, Frame) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotActionGUI

CreateXYScatterPlotActionModel - Class in tech.molecules.leet.table.action

CreateXYScatterPlotActionModel(NexusTableModel, JPanel) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

CreateXYScatterPlotActionModel(NexusTableModel, CreateXYScatterPlotActionConfig) - Constructor for class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

D

DashboardApp - Class in tech.molecules

Hello world!

DashboardApp() - Constructor for class tech.molecules.DashboardApp

dataset - Variable in class tech.molecules.leet.similarity.UMapHelper.UMapXYChartConfig

dataset - Variable in class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

DefaultClass(String, String, Set<String>, Color) - Constructor for class tech.molecules.leet.table.DefaultClustering.DefaultClass

DefaultClustering<T> - Class in tech.molecules.leet.table

DefaultClustering() - Constructor for class tech.molecules.leet.table.DefaultClustering

DefaultClustering.DefaultClass - Class in tech.molecules.leet.table

DefaultEditorFromRenderer(TableCellRenderer) - Constructor for class tech.molecules.leet.table.NexusTable.DefaultEditorFromRenderer

DefaultMultiNumericDataProvider - Class in tech.molecules.leet.table

DefaultMultiNumericDataProvider(Map<String, double[]>) - Constructor for class tech.molecules.leet.table.DefaultMultiNumericDataProvider

DefaultNumericCellEditor - Class in tech.molecules.leet.table

DefaultNumericCellEditor(NColumn) - Constructor for class tech.molecules.leet.table.DefaultNumericCellEditor

DefaultNumericCellEditor.JEditorLabel - Class in tech.molecules.leet.table

DefaultNumericRangeFilter<X,T> - Class in tech.molecules.leet.table

DefaultNumericRangeFilter(NColumn<X, T>, String) - Constructor for class tech.molecules.leet.table.DefaultNumericRangeFilter

DefaultRendererFromEditor(TableCellEditor) - Constructor for class tech.molecules.leet.table.NexusTable.DefaultRendererFromEditor

DefaultStringCellEditor - Class in tech.molecules.leet.table

DefaultStringCellEditor(NColumn) - Constructor for class tech.molecules.leet.table.DefaultStringCellEditor

DefaultStringDataProvider - Class in tech.molecules.leet.table

DefaultStringDataProvider(Map<String, String>) - Constructor for class tech.molecules.leet.table.DefaultStringDataProvider

DefaultStructureDataProvider - Class in tech.molecules.leet.table

DefaultStructureDataProvider(List<String[]>) - Constructor for class tech.molecules.leet.table.DefaultStructureDataProvider

DispatchingMouseAdapter - Class in tech.molecules.leet.table.gui

DispatchingMouseAdapter(Supplier<Component>) - Constructor for class tech.molecules.leet.table.gui.DispatchingMouseAdapter

dispatchMousePressedEvent(MouseEvent) - Method in class tech.molecules.leet.table.NexusTable.NexusInteractiveEditorInfrastructure

DRAGGING - tech.molecules.leet.table.chart.JFreeChartScatterPlot.LASSO_STATE

draw(Graphics2D, Rectangle2D) - Method in class tech.molecules.leet.table.chart.CircleDrawer

Draws the circle.

draw(Graphics2D, Rectangle2D) - Method in class tech.molecules.leet.table.chart.MultiCircleDrawer

Draws the circle.

dumpPathIteratorCoords(PathIterator) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.LassoMouseListener

DWARImportAction(Frame, String) - Constructor for class tech.molecules.leet.table.io.JDWARImportPanel.DWARImportAction

DWARSimpleWrapper - Class in tech.molecules.leet.table.io

Reads a dwar file into memory

DWARSimpleWrapper(String, List<DWARSimpleWrapper.DWARColumnImporter>) - Constructor for class tech.molecules.leet.table.io.DWARSimpleWrapper

DWARSimpleWrapper.DWARColumnImporter<U extends NDataProvider,T extends NColumn> - Interface in tech.molecules.leet.table.io

DWARSimpleWrapper.MultiNumericColumnImporter - Class in tech.molecules.leet.table.io

DWARSimpleWrapper.StringColumnImporter - Class in tech.molecules.leet.table.io

DWARSimpleWrapper.StructureColumnImporter - Class in tech.molecules.leet.table.io

E

equals(Object) - Method in class tech.molecules.leet.table.NexusTableModel.SelectionType

equipJacksonDeserializer(ObjectMapper, Map<Integer, Pair<Class, Object>>) - Static method in class tech.molecules.leet.table.NexusTableModel

Registers all necessary deserializers required for the Jackson object mapper.

equipJacksonSerializer(ObjectMapper) - Static method in class tech.molecules.leet.table.NexusTableModel

This registers all necessary serializers in the Jackson object mapper.

evaluate(NDataProvider.StructureDataProvider, String, String) - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

evaluate(U, String, String) - Method in interface tech.molecules.leet.table.SimilarityProvider

evaluateColorValues(Colormap, Map<String, Double>) - Static method in class tech.molecules.leet.util.ColorMapHelper

evaluateColorValues(Colormap, NexusTableModel, NumericalDatasource) - Static method in class tech.molecules.leet.util.ColorMapHelper

evaluateNumericalDataSource(NStructureDataProvider, String, String) - Static method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

evaluateNumericalDS(NDataProvider, NColumn, String, List<String>) - Static method in class tech.molecules.leet.table.chart.XYChartCreator

evaluateSimilarityDS(NDataProvider, NSimilarityColumn, List<String>) - Static method in class tech.molecules.leet.table.chart.XYChartCreator

evaluateValue(NDataProvider.StructureDataProvider, String, String) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

evaluateValue(U, String, String) - Method in interface tech.molecules.leet.table.NSimilarityColumn

F

filterNexusRows(NStructureDataProvider, List<String>, BitSet) - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

filterNexusRows(NStructureDataProvider, List<String>, BitSet) - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

filterNexusRows(T, List<String>, BitSet) - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

filterNexusRows(U, List<String>, BitSet) - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

fireClustersChanged() - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterListModel

fireClustersChanged() - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

fireClustersChanged() - Method in class tech.molecules.leet.table.NClassification.ClassificationTableModel

fireNexusTableStructureChangedEvent() - Method in class tech.molecules.leet.table.NexusTableModel

FixedNumericalDataColumn - Class in tech.molecules.leet.table

FixedNumericalDataColumn(String, Map<String, Double>) - Constructor for class tech.molecules.leet.table.FixedNumericalDataColumn

G

getAccessButton(NexusTableModel, Frame) - Static method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

getActionGUI() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionGUI

getActionName() - Method in class tech.molecules.leet.table.NColumn.CellSpecificAction

getAllRows() - Method in class tech.molecules.leet.table.NexusTableModel

getApproximateFilterSpeed() - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

getApproximateFilterSpeed() - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

getApproximateFilterSpeed() - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

getApproximateFilterSpeed() - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

getCellEditor() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getCellEditor() - Method in class tech.molecules.leet.table.ClassificationColumn

getCellEditor() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getCellEditor() - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getCellEditor() - Method in interface tech.molecules.leet.table.NColumn

getCellEditor() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getCellEditor() - Method in class tech.molecules.leet.table.StringColumn

getCellEditor() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getCellEditor() - Method in class tech.molecules.leet.table.StructureColumn

getCellEditorValue() - Method in class tech.molecules.leet.table.ClassificationColumn.ClassificationRenderer

getCellEditorValue() - Method in class tech.molecules.leet.table.DefaultNumericCellEditor

getCellEditorValue() - Method in class tech.molecules.leet.table.DefaultStringCellEditor

getCellEditorValue() - Method in class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

getCellEditorValue() - Method in class tech.molecules.leet.table.NexusTable.DefaultEditorFromRenderer

getCellEditorValue() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer

getCellRenderer() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getCellRenderer() - Method in class tech.molecules.leet.table.StructureColumn

getChart() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getChartPanel() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot2

getClasses() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClasses() - Method in class tech.molecules.leet.table.DefaultClustering

getClasses() - Method in interface tech.molecules.leet.table.NClassification

getClassesForRow(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClassesForRow(String) - Method in class tech.molecules.leet.table.DefaultClustering

getClassesForRow(String) - Method in interface tech.molecules.leet.table.NClassification

getClassification() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClassification() - Method in interface tech.molecules.leet.table.NDataProvider.ClassificationProvider

getClassificationColumn() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClassificationData(String) - Method in interface tech.molecules.leet.table.NDataProvider.ClassificationDataProvider

getClassifications() - Method in interface tech.molecules.leet.table.NColumn

getClusterAppModel() - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel

getClusterAppModel() - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

getClusterByName(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClusterColoring() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClusterListModel() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClusters() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getClusterTableModel() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getColor() - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

getColor() - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

getColor() - Method in interface tech.molecules.leet.table.NClassification.NClass

getColor() - Method in class tech.molecules.leet.table.NexusTableModel.SelectionType

getColumn() - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

getColumn() - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

getColumn() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

getColumn() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

getColumn() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

getColumn() - Method in class tech.molecules.leet.table.NColumn.CellSpecificAction

getColumn() - Method in interface tech.molecules.leet.table.NumericalDatasource

getColumn() - Method in interface tech.molecules.leet.table.SimilarityProvider

getColumn() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource

getColumnCount() - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

getColumnCount() - Method in class tech.molecules.leet.table.NClassification.ClassificationTableModel

getColumnCount() - Method in class tech.molecules.leet.table.NexusTableModel

getColumnName(int) - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

getColumnName(int) - Method in class tech.molecules.leet.table.NClassification.ClassificationTableModel

getConfig() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

getConfig(NexusTableModel, JPanel) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionGUI

getContainedEntities() - Method in class tech.molecules.leet.table.chart.JFreeChartPlotLasso

Returns the previously calculated entities.

getContainedEntities(EntityCollection) - Method in class tech.molecules.leet.table.chart.JFreeChartPlotLasso

getData(String) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getData(String) - Method in class tech.molecules.leet.table.ClassificationColumn

getData(String) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getData(String) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getData(String) - Method in interface tech.molecules.leet.table.NColumn

getData(String) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getData(String) - Method in class tech.molecules.leet.table.StringColumn

getData(String) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getData(String) - Method in class tech.molecules.leet.table.StructureColumn

getDataProvider() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getDataProvider() - Method in class tech.molecules.leet.table.ClassificationColumn

getDataProvider() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getDataProvider() - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

getDataProvider() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

getDataProvider() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

getDataProvider() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

getDataProvider() - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getDataProvider() - Method in interface tech.molecules.leet.table.NColumn

getDataProvider() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getDataProvider() - Method in class tech.molecules.leet.table.StringColumn

getDataProvider() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getDataProvider() - Method in class tech.molecules.leet.table.StructureColumn

getDataset() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getDatasetForColumn(NColumn<U, T>) - Method in class tech.molecules.leet.table.NexusTableModel

getDescription() - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

getDescription() - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

getDescription() - Method in interface tech.molecules.leet.table.NClassification.NClass

getDp_color() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getDp_x() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getDp_y() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getElementAt(int) - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterListModel

getEvaluatedRowIds() - Method in class tech.molecules.leet.table.NColumn.CellSpecificAction

getFilterGUI() - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

getFilterGUI() - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

getFilterGUI() - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

getFilterGUI() - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

getFilterName() - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

getFilterName() - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

getFilterName() - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

getFilterName() - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

getFilterPanel() - Method in class tech.molecules.leet.table.NexusTable

getGroup() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getGroup() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getHighlighted() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getHighlightingAndSelectionStatus(int) - Method in class tech.molecules.leet.table.NexusTableModel

getHighlightMap(Collection<String>) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getHighlightMap(Collection<String>) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getHighlightMap(EntityCollection, EntityCollection) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getHighlightMap(EntityCollection, EntityCollection) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getHighlightNNearestNeighbors() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getIndex(Comparable) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getIndex(Comparable) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getIndex(Comparable) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getIndexForKey(String) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getIndexForKey(String) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getItemCount() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getItemCount() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getItemCount() - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getItemCount(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

getItemCount(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getKey(int) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getKey(int) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getKey(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getKeyAtVisiblePosition(int) - Method in class tech.molecules.leet.table.NexusTableModel

getKeyForIndex(int) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getKeyForIndex(int) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getKeyForXYEntity(XYItemEntity) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getKeyForXYEntity(XYItemEntity) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getKeys() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getKeys() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getKeys() - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getLeftUpperCorner() - Method in class tech.molecules.leet.similarity.gui.JUmapView

getLinkContacts() - Method in class tech.molecules.leet.similarity.gui.JUmapView

getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

getLowerBound() - Method in class tech.molecules.leet.util.ColorMapHelper.PaintScaleFromColormap

getLowerBound() - Method in class tech.molecules.leet.util.ColorMapHelper.SpectrumPaintScale

getMaximumSize() - Method in class tech.molecules.leet.table.gui.JFilterPanel

getMembers() - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

getMembers() - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

getMembers() - Method in interface tech.molecules.leet.table.NClassification.NClass

getMenu() - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

getMenuBar() - Method in class tech.molecules.leet.table.gui.JExtendedEditorPanel

getMinimumSize() - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel

getMinimumSize() - Method in class tech.molecules.leet.table.gui.JFilterPanel

getModel() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot2

getModel() - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

public static Pair> getSelectorMenu(NexusTableModel ntm) { JNumericalDataSourceSelector jndss = new JNumericalDataSourceSelector(new NumericalDataSourceSelectorModel(ntm),SELECTOR_MODE.Menu); Supplier snd = () -> jndss.model.getSelectedDatasource(); return Pair.of(jndss.getMenu(),snd); }

getMultiNumericData(String) - Method in class tech.molecules.leet.table.DefaultMultiNumericDataProvider

getMultiNumericData(String) - Method in interface tech.molecules.leet.table.NDataProvider.MultiNumericDataProvider

getName() - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

getName() - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

getName() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getName() - Method in class tech.molecules.leet.table.ClassificationColumn

getName() - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

getName() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getName() - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getName() - Method in interface tech.molecules.leet.table.NClassification.NClass

getName() - Method in interface tech.molecules.leet.table.NColumn

getName() - Method in class tech.molecules.leet.table.NexusTableModel.SelectionType

getName() - Method in interface tech.molecules.leet.table.NumericalDatasource

getName() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getName() - Method in interface tech.molecules.leet.table.SimilarityProvider

getName() - Method in class tech.molecules.leet.table.StringColumn

getName() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource

getName() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getName() - Method in class tech.molecules.leet.table.StructureColumn

getNd_color() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getNd_x() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getNd_y() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getNewColor() - Method in class tech.molecules.leet.clustering.gui.JClusterAndColorConfig

getNewColor() - Method in class tech.molecules.leet.table.gui.JClusterAndColorConfig

getNewName() - Method in class tech.molecules.leet.clustering.gui.JClusterAndColorConfig

getNewName() - Method in class tech.molecules.leet.table.gui.JClusterAndColorConfig

getNexusColumns() - Method in class tech.molecules.leet.table.NexusTableModel

getNexusColumnsWithDataProviders() - Method in class tech.molecules.leet.table.NexusTableModel

getNexusTableModel() - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

getNexusTableModel() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getNexusTableModel() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper

getNexusTableModel() - Method in class tech.molecules.leet.workbench.WorkbenchModel

getNNearestEntities(EntityCollection, int, int, int) - Static method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getNNearestEntities(EntityCollection, int, int, int) - Static method in class tech.molecules.leet.table.chart.ScatterPlotModel

getNtm() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getNTM() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

getNumericalDataSources() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.ClassificationColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getNumericalDataSources() - Method in interface tech.molecules.leet.table.NColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.StringColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getNumericalDataSources() - Method in class tech.molecules.leet.table.StructureColumn

getPaint(double) - Method in class tech.molecules.leet.util.ColorMapHelper.PaintScaleFromColormap

getPaint(double) - Method in class tech.molecules.leet.util.ColorMapHelper.SpectrumPaintScale

getPath() - Method in class tech.molecules.leet.table.chart.JFreeChartPlotLasso

getPlotPanel() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

getPositionOfKey(String) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

getPositionOfKey(String) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot2

getPreferredSize() - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel

getPreferredSize() - Method in class tech.molecules.leet.table.gui.JFilterPanel

getRange() - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

getRangeSlider() - Method in class tech.molecules.leet.table.gui.JExtendedSlimRangeSlider

getRowCount() - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

getRowCount() - Method in class tech.molecules.leet.table.NClassification.ClassificationTableModel

getRowCount() - Method in class tech.molecules.leet.table.NexusTableModel

getRowFilterTypes() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.ClassificationColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.MultiNumericDataColumn

getRowFilterTypes() - Method in interface tech.molecules.leet.table.NColumn

NOTE: There are columns that have different row filters available depending on the colunn configuration.

getRowFilterTypes() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.StringColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getRowFilterTypes() - Method in class tech.molecules.leet.table.StructureColumn

getRowIdForVisibleRow(int) - Method in class tech.molecules.leet.table.NexusTableModel

Provides mapping from table model row index to row id.

getRows() - Method in class tech.molecules.leet.table.NexusTableModel.NexusHighlightingChangedEvent

getRows() - Method in class tech.molecules.leet.table.NexusTableModel.NexusSelectionChangedEvent

getSelected() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel

getSelectedDatasource() - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector.NumericalDataSourceSelectorModel

getSelection() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getSelectionType(String) - Method in class tech.molecules.leet.table.NexusTableModel

getSelectionTypeRows(String) - Method in class tech.molecules.leet.table.NexusTableModel

getSelectorPanel(NexusTableModel, Frame) - Static method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

getSelectorPanel2(NexusTableModel, Frame) - Static method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

getSeriesCount() - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

getSeriesCount() - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getSeriesKey(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

getSeriesKey(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getSimilarityColumns() - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

getSize() - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterListModel

getSlider() - Method in class tech.molecules.leet.table.gui.JExtendedSlider

getSliderValue() - Method in class tech.molecules.leet.table.gui.JExtendedSlider

getSource() - Method in class tech.molecules.leet.table.NexusTableModel.NexusEvent

getStringData(String) - Method in class tech.molecules.leet.table.DefaultStringDataProvider

getStringData(String) - Method in interface tech.molecules.leet.table.NDataProvider.StringDataProvider

getStructure() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

getStructureData(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel

getStructureData(String) - Method in interface tech.molecules.leet.table.chem.NSynthonWithContextDataProvider

getStructureData(String) - Method in class tech.molecules.leet.table.DefaultStructureDataProvider

getStructureData(String) - Method in interface tech.molecules.leet.table.NDataProvider.StructureDataProvider

getStructureData(String) - Method in class tech.molecules.leet.table.NDataProvider.StructureDataProviderFromColumn

getStructureMouseOver() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel

getStructureProvider() - Method in class tech.molecules.leet.clustering.ClusterAppModel

getStructureProvider() - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

getStructures() - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

getSwingEditorPanel() - Method in class tech.molecules.leet.table.gui.JExtendedEditorPanel

getSynthon() - Method in class tech.molecules.leet.table.chem.NSynthonWithContextDataProvider.SynthonStructureWithID

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.ClassificationColumn.ClassificationRenderer

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.DefaultNumericCellEditor

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.DefaultStringCellEditor

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.NexusTable.DefaultEditorFromRenderer

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class tech.molecules.leet.table.StructureColumn.StructureCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class tech.molecules.leet.table.ClassificationColumn.ClassificationRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class tech.molecules.leet.table.gui.JSimpleClusterView.ColorRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class tech.molecules.leet.table.NexusTable.DefaultRendererFromEditor

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer

getTableModel() - Method in class tech.molecules.leet.table.io.JDWARImportPanel.DWARImportAction

getTableModel() - Method in class tech.molecules.leet.table.NexusTable

getText() - Method in class tech.molecules.leet.table.gui.JActivatableTextField

getThis() - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

getThisColumn() - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

getThisColumn() - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

getThisJPanel() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel

getThisJPanel() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

getThisTable() - Method in class tech.molecules.leet.table.NexusTable

getTimestamp(String) - Method in interface tech.molecules.leet.table.NClassification.NClassWithTimestamp

getTopPanel() - Method in class tech.molecules.leet.table.NexusTable

getTreeModel() - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector.NumericalDataSourceSelectorModel

getUmapViewModel() - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel

getUpperBound() - Method in class tech.molecules.leet.util.ColorMapHelper.PaintScaleFromColormap

getUpperBound() - Method in class tech.molecules.leet.util.ColorMapHelper.SpectrumPaintScale

getValue(int) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getValue(int) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getValue(int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getValue(Comparable) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

getValue(Comparable) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

getValue(Comparable) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getValue(String) - Method in interface tech.molecules.leet.table.NumericalDatasource

getValue(String) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource

getValueAt(int, int) - Method in class tech.molecules.leet.clustering.ClusterAppModel.ClusterTableModel

getValueAt(int, int) - Method in class tech.molecules.leet.table.NClassification.ClassificationTableModel

getValueAt(int, int) - Method in class tech.molecules.leet.table.NexusTableModel

getVisiblePositionOfKey(String) - Method in class tech.molecules.leet.table.NexusTableModel

getVisibleRows() - Method in class tech.molecules.leet.table.NexusTableModel

getX(int, int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

getX(int, int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getXY(ChartMouseEvent) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.LassoMouseListener

getXYPlot() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getXYShapeRenderer() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

getY(int, int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

getY(int, int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

getZ(int, int) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

guiChanged(boolean, boolean) - Method in interface tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel.ModelListener

H

hashCode() - Method in class tech.molecules.leet.table.NexusTableModel.SelectionType

hasValue(String) - Method in interface tech.molecules.leet.table.NumericalDatasource

hasValue(String) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource

highlightingChanged() - Method in interface tech.molecules.leet.similarity.gui.UmapViewModel.UmapViewListener

highlightingChanged(NexusTableModel.NexusHighlightingChangedEvent) - Method in interface tech.molecules.leet.clustering.ClusterAppModel.ClusterAppModelListener

highlightingChanged(NexusTableModel.NexusHighlightingChangedEvent) - Method in interface tech.molecules.leet.table.chart.JFreeChartScatterPlot.ScatterPlotListener

highlightingChanged(NexusTableModel.NexusHighlightingChangedEvent) - Method in interface tech.molecules.leet.table.chart.ScatterPlotModel.ScatterPlotListener

highlightingColor - Variable in class tech.molecules.leet.table.NexusTableModel.NexusHighlightingAndSelectionStatus

I

importer - Variable in class tech.molecules.leet.table.io.JDWARImportPanel.ImportOption

ImportOption(String, DWARSimpleWrapper.DWARColumnImporter<U, T>) - Constructor for class tech.molecules.leet.table.io.JDWARImportPanel.ImportOption

init(NexusTableModel) - Method in class tech.molecules.leet.clustering.ClusterAppModel

initContextMenu() - Method in class tech.molecules.leet.similarity.gui.JUmapView

initMenuBar(JMenuBar, NexusTableModel, List<ScatterPlotModel>) - Static method in class tech.molecules.leet.table.chart.JScatterPlotConfigurationMenuBar

initSimilarities(List<String>) - Method in class tech.molecules.leet.similarity.gui.UmapViewModel

initWithStructures(List<Pair<String, String>>) - Static method in class tech.molecules.DashboardApp

InteractiveJTable - Class in tech.molecules.leet.table.gui

InteractiveJTable() - Constructor for class tech.molecules.leet.table.gui.InteractiveJTable

InteractiveJTable.TwoStageTableCellEditor - Interface in tech.molecules.leet.table.gui

inventConfig(JPanel) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

isActivated() - Method in class tech.molecules.leet.table.gui.JActivatableTextField

isCellEditable(int, int) - Method in class tech.molecules.leet.table.NexusTableModel

isFullyEngaged() - Method in interface tech.molecules.leet.table.gui.InteractiveJTable.TwoStageTableCellEditor

isInStageTwo() - Method in interface tech.molecules.leet.table.gui.InteractiveJTable.TwoStageTableCellEditor

isMember(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

isMember(String) - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

isMember(String) - Method in interface tech.molecules.leet.table.NClassification.NClass

isMinimized() - Method in class tech.molecules.leet.table.gui.JFilterPanel

isNormalized() - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

isNormalized() - Method in interface tech.molecules.leet.table.NSimilarityColumn

If value is always in between 0 and 1.

isNormalized() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

isNormalized() - Method in interface tech.molecules.leet.table.SimilarityProvider

If value is always in between 0 and 1.

isReady() - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

isReady() - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

isReady() - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

For certain filters it may be possible that the column first has to initialize specific datastructures asynchronously.

isReady() - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

isSelected() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

isSimilarity() - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

isSimilarity() - Method in interface tech.molecules.leet.table.NSimilarityColumn

true for similarity, false for distance

isSimilarity() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

isSimilarity() - Method in interface tech.molecules.leet.table.SimilarityProvider

true for similarity, false for distance

isSymmetric() - Method in class tech.molecules.leet.table.CachedDescriptorSimilarityProvider

isSymmetric() - Method in interface tech.molecules.leet.table.NSimilarityColumn

isSymmetric() - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

isSymmetric() - Method in interface tech.molecules.leet.table.SimilarityProvider

J

JActivatableTextField - Class in tech.molecules.leet.table.gui

JActivatableTextField(String, boolean, String, int, Function<String, Boolean>, Consumer) - Constructor for class tech.molecules.leet.table.gui.JActivatableTextField

java2dToChart(ChartPanel, XYPlot, double, double) - Static method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

java2dToChart(ChartPanel, XYPlot, double, double) - Static method in class tech.molecules.leet.table.chart.ScatterPlotModel

JCellBackgroundPanel(NexusTable, NexusTableModel.NexusHighlightingAndSelectionStatus) - Constructor for class tech.molecules.leet.table.NexusTable.JCellBackgroundPanel

JClusterAndColorConfig - Class in tech.molecules.leet.clustering.gui

JClusterAndColorConfig - Class in tech.molecules.leet.table.gui

JClusterAndColorConfig(String, Color, Consumer<Pair<String, Color>>) - Constructor for class tech.molecules.leet.clustering.gui.JClusterAndColorConfig

JClusterAndColorConfig(String, Color, Consumer<Pair<String, Color>>) - Constructor for class tech.molecules.leet.table.gui.JClusterAndColorConfig

JClusteringToolView - Class in tech.molecules.leet.clustering.gui

JClusteringToolView(ClusterAppModel) - Constructor for class tech.molecules.leet.clustering.gui.JClusteringToolView

JColorLabel(String, double, double, double) - Constructor for class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer.JColorLabel

JColorLabel(String, Color) - Constructor for class tech.molecules.leet.table.ClassificationColumn.JColorLabel

JDWARImportPanel - Class in tech.molecules.leet.table.io

JDWARImportPanel(String, Consumer<NexusTableModel>) - Constructor for class tech.molecules.leet.table.io.JDWARImportPanel

JDWARImportPanel.DWARImportAction - Class in tech.molecules.leet.table.io

JDWARImportPanel.ImportOption<U extends NDataProvider,T extends NColumn> - Class in tech.molecules.leet.table.io

JEditorLabel(String) - Constructor for class tech.molecules.leet.table.DefaultNumericCellEditor.JEditorLabel

JExtendedEditorPanel - Class in tech.molecules.leet.table.gui

JExtendedEditorPanel() - Constructor for class tech.molecules.leet.table.gui.JExtendedEditorPanel

JExtendedSlider - Class in tech.molecules.leet.table.gui

JExtendedSlider(String, double[], int) - Constructor for class tech.molecules.leet.table.gui.JExtendedSlider

JExtendedSlimRangeSlider - Class in tech.molecules.leet.table.gui

JExtendedSlimRangeSlider(String, double[]) - Constructor for class tech.molecules.leet.table.gui.JExtendedSlimRangeSlider

JFilterPanel - Class in tech.molecules.leet.table.gui

JFilterPanel() - Constructor for class tech.molecules.leet.table.gui.JFilterPanel

JFreeChartPlotLasso - Class in tech.molecules.leet.table.chart

Implements lasso select.

JFreeChartPlotLasso(double, double) - Constructor for class tech.molecules.leet.table.chart.JFreeChartPlotLasso

JFreeChartScatterPlot - Class in tech.molecules.leet.table.chart

Provides synchronization in between NexusTableModel and scatter plot.

JFreeChartScatterPlot(NexusTableModel, KeyedValuesDataset, KeyedValuesDataset) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot

JFreeChartScatterPlot(NexusTableModel, NumericalDatasource, NumericalDatasource) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot

JFreeChartScatterPlot.LASSO_STATE - Enum in tech.molecules.leet.table.chart

JFreeChartScatterPlot.LassoMouseListener - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot.NumericalDatasourceKeyedDataset<U> - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot.ScatterPlotListener - Interface in tech.molecules.leet.table.chart

JFreeChartScatterPlot.SetClusteringAnnotationsAction - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot.SetColoringAction - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot.SetColormapAction - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot2 - Class in tech.molecules.leet.table.chart

JFreeChartScatterPlot2(ScatterPlotModel) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot2

JFreeChartScatterPlot2(ScatterPlotModel, boolean) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot2

JGridPanel(JStructureGridPanel, NDataProvider.StructureWithID, JComponent) - Constructor for class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

JHistogramPanel - Class in tech.molecules.leet.histogram

JHistogramPanel() - Constructor for class tech.molecules.leet.histogram.JHistogramPanel

JNexusPanel(NexusTable.NexusInteractiveEditorInfrastructure) - Constructor for class tech.molecules.leet.table.NexusTable.JNexusPanel

JNexusTopPanel - Class in tech.molecules.leet.table.gui

JNexusTopPanel(NexusTable) - Constructor for class tech.molecules.leet.table.gui.JNexusTopPanel

JNumericalDataSourceSelector - Class in tech.molecules.leet.table.gui

JNumericalDataSourceSelector(JNumericalDataSourceSelector.NumericalDataSourceSelectorModel, JNumericalDataSourceSelector.SELECTOR_MODE) - Constructor for class tech.molecules.leet.table.gui.JNumericalDataSourceSelector

JNumericalDataSourceSelector.NumericalDataSourceSelectorModel - Class in tech.molecules.leet.table.gui

JNumericalDataSourceSelector.SelectionListener - Interface in tech.molecules.leet.table.gui

JNumericalDataSourceSelector.SELECTOR_MODE - Enum in tech.molecules.leet.table.gui

JScatterPlotConfigurationMenuBar - Class in tech.molecules.leet.table.chart

JScatterPlotConfigurationMenuBar(NexusTableModel) - Constructor for class tech.molecules.leet.table.chart.JScatterPlotConfigurationMenuBar

JScatterPlotConfigurationPanel - Class in tech.molecules.leet.table.chart

JScatterPlotConfigurationPanel() - Constructor for class tech.molecules.leet.table.chart.JScatterPlotConfigurationPanel

JSimpleClusterView - Class in tech.molecules.leet.table.gui

JSimpleClusterView(NDataProvider.StructureDataProvider, NClassification) - Constructor for class tech.molecules.leet.table.gui.JSimpleClusterView

JSimpleClusterView.ColorRenderer - Class in tech.molecules.leet.table.gui

JSlimRangeSlider - Class in tech.molecules.leet.table.gui

JSlimRangeSlider(double, double) - Constructor for class tech.molecules.leet.table.gui.JSlimRangeSlider

JStructureGridPanel - Class in tech.molecules.leet.table.gui

JStructureGridPanel(List<NDataProvider.StructureWithID>, int, int) - Constructor for class tech.molecules.leet.table.gui.JStructureGridPanel

JStructureGridPanel(List<NDataProvider.StructureWithID>, int, int, Map<String, List<Color>>, List<Pair<String, Map<String, String>>>, List<Triple<String, Map<String, Double>, Colormap>>) - Constructor for class tech.molecules.leet.table.gui.JStructureGridPanel

JStructureGridPanel.JGridPanel - Class in tech.molecules.leet.table.gui

JStructureSelectionPanel - Class in tech.molecules.leet.clustering.gui

Provides compound list views for selection and mouse over structures of the umap view.

JStructureSelectionPanel(JStructureSelectionPanel.StructureSelectionModel) - Constructor for class tech.molecules.leet.clustering.gui.JStructureSelectionPanel

JStructureSelectionPanel.StructureSelectionModel - Class in tech.molecules.leet.clustering.gui

JStructureSelectionPanel.StructureSelectionModel.ModelListener - Interface in tech.molecules.leet.clustering.gui

JUmapView - Class in tech.molecules.leet.similarity.gui

JUmapView(UmapViewModel) - Constructor for class tech.molecules.leet.similarity.gui.JUmapView

JWorkbench - Class in tech.molecules.leet.workbench

Provides simple GUI around the table component and offers basic functionality for data analysis and functionality for handling chemical data.

JWorkbench(WorkbenchModel) - Constructor for class tech.molecules.leet.workbench.JWorkbench

L

LassoMouseListener() - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot.LassoMouseListener

LeetChemistryCellRenderer - Class in tech.molecules.leet.table.gui

LeetChemistryCellRenderer() - Constructor for class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

LeetChemistryCellRenderer(Dimension) - Constructor for class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

loadFile() - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper

lockTable - Variable in class tech.molecules.leet.table.NexusTableModel

M

main(String[]) - Static method in class tech.molecules.DashboardApp

main(String[]) - Static method in class tech.molecules.leet.histogram.JHistogramPanel

main(String[]) - Static method in class tech.molecules.leet.similarity.UMapHelper

main(String[]) - Static method in class tech.molecules.leet.table.chart.XYChartCreator

main(String[]) - Static method in class tech.molecules.leet.table.gui.JSlimRangeSlider

main(String[]) - Static method in class tech.molecules.leet.table.io.JDWARImportPanel

Menu - tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SELECTOR_MODE

molid - Variable in class tech.molecules.leet.table.NDataProvider.StructureWithID

mouseClicked(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mouseDragged(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mouseEntered(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mouseExited(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mouseMoved(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mousePressed(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

mouseReleased(MouseEvent) - Method in class tech.molecules.leet.table.gui.DispatchingMouseAdapter

MultiCircleDrawer - Class in tech.molecules.leet.table.chart

MultiCircleDrawer(List<Paint>, Stroke) - Constructor for class tech.molecules.leet.table.chart.MultiCircleDrawer

Creates a new instance.

MultiNumericColumnImporter(String, boolean) - Constructor for class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

MultiNumericDataColumn - Class in tech.molecules.leet.table

MultiNumericDataColumn(String) - Constructor for class tech.molecules.leet.table.MultiNumericDataColumn

N

name - Variable in class tech.molecules.leet.table.io.JDWARImportPanel.ImportOption

NClassification - Interface in tech.molecules.leet.table

NClassification.ClassificationListener - Interface in tech.molecules.leet.table

NClassification.ClassificationTableModel - Class in tech.molecules.leet.table

Helper class that provides a table model showing the classes of a classification.

NClassification.NClass - Interface in tech.molecules.leet.table

NClassification.NClassWithTimestamp - Interface in tech.molecules.leet.table

NColumn<U,T> - Interface in tech.molecules.leet.table

NColumn.CellSpecificAction - Class in tech.molecules.leet.table

NColumn.ColumnDataListener - Interface in tech.molecules.leet.table

NColumn.NexusRowFilter<U> - Interface in tech.molecules.leet.table

NDataProvider - Interface in tech.molecules.leet.table

NDataProvider.ClassificationDataProvider - Interface in tech.molecules.leet.table

NDataProvider.ClassificationProvider<C extends NClassification> - Interface in tech.molecules.leet.table

NDataProvider.MultiNumericDataProvider - Interface in tech.molecules.leet.table

NDataProvider.NClassificationProvider<C extends NClassification> - Interface in tech.molecules.leet.table

NDataProvider.NMultiNumericDataProvider - Interface in tech.molecules.leet.table

NDataProvider.NStringDataProvider - Interface in tech.molecules.leet.table

NDataProvider.StringDataProvider - Interface in tech.molecules.leet.table

NDataProvider.StructureDataProvider - Interface in tech.molecules.leet.table

NDataProvider.StructureDataProviderFromColumn<U> - Class in tech.molecules.leet.table

NDataProvider.StructureWithID - Class in tech.molecules.leet.table

needFiltering() - Method in interface tech.molecules.leet.table.NColumn.ColumnDataListener

NexusChemPropertiesFilter - Class in tech.molecules.leet.table.chem

NexusChemPropertiesFilter(NColumn<NDataProvider.StructureWithID, NStructureDataProvider>) - Constructor for class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

NexusEvent(Object) - Constructor for class tech.molecules.leet.table.NexusTableModel.NexusEvent

NexusHighlightingAndSelectionStatus(Color, List<NexusTableModel.SelectionType>) - Constructor for class tech.molecules.leet.table.NexusTableModel.NexusHighlightingAndSelectionStatus

NexusHighlightingChangedEvent(Object, Set<String>) - Constructor for class tech.molecules.leet.table.NexusTableModel.NexusHighlightingChangedEvent

NexusInteractiveEditorInfrastructure(int) - Constructor for class tech.molecules.leet.table.NexusTable.NexusInteractiveEditorInfrastructure

NexusSelectionChangedEvent(Object, Set<String>) - Constructor for class tech.molecules.leet.table.NexusTableModel.NexusSelectionChangedEvent

NexusTable - Class in tech.molecules.leet.table

Some notes on the implementation of columns with fully interactive editors.

NexusTable(NexusTableModel) - Constructor for class tech.molecules.leet.table.NexusTable

NexusTable.DefaultEditorFromRenderer - Class in tech.molecules.leet.table

NexusTable.DefaultRendererFromEditor - Class in tech.molecules.leet.table

NexusTable.JCellBackgroundPanel - Class in tech.molecules.leet.table

NexusTable.JNexusPanel - Class in tech.molecules.leet.table

NexusTable.NexusInteractiveEditorInfrastructure - Class in tech.molecules.leet.table

NexusTableModel - Class in tech.molecules.leet.table

NexusTableModel() - Constructor for class tech.molecules.leet.table.NexusTableModel

NexusTableModel.NexusEvent - Class in tech.molecules.leet.table

NexusTableModel.NexusHighlightingAndSelectionStatus - Class in tech.molecules.leet.table

Describes the selection and highlighting status of a given row.

NexusTableModel.NexusHighlightingChangedEvent - Class in tech.molecules.leet.table

NexusTableModel.NexusSelectionChangedEvent - Class in tech.molecules.leet.table

NexusTableModel.NexusTableModelListener - Interface in tech.molecules.leet.table

NexusTableModel.SelectionType - Class in tech.molecules.leet.table

nexusTableStructureChanged() - Method in class tech.molecules.leet.table.gui.JSimpleClusterView

nexusTableStructureChanged() - Method in interface tech.molecules.leet.table.NexusTableModel.NexusTableModelListener

NONE - tech.molecules.leet.table.chart.JFreeChartScatterPlot.LASSO_STATE

NSimilarityColumn<U,T> - Interface in tech.molecules.leet.table

NStructureDataProvider - Interface in tech.molecules.leet.table

NSynthonWithContextColumn - Class in tech.molecules.leet.table.chem

NSynthonWithContextColumn() - Constructor for class tech.molecules.leet.table.chem.NSynthonWithContextColumn

NSynthonWithContextColumn.SYNTHON_COLUMN_MODE - Enum in tech.molecules.leet.table.chem

NSynthonWithContextDataProvider - Interface in tech.molecules.leet.table.chem

NSynthonWithContextDataProvider.SynthonStructureWithID - Class in tech.molecules.leet.table.chem

NumericalDatasource<U> - Interface in tech.molecules.leet.table

NumericalDatasourceKeyedDataset(NexusTableModel, NumericalDatasource<U>) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

NumericalDatasourceKeyedDataset(NexusTableModel, NumericalDatasource<U>) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

NumericalDataSourceSelectorModel(NexusTableModel) - Constructor for class tech.molecules.leet.table.gui.JNumericalDataSourceSelector.NumericalDataSourceSelectorModel

O

OnlyJMenu - tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SELECTOR_MODE

P

paintComponent(Graphics) - Method in class tech.molecules.leet.table.gui.JFilterPanel

paintComponent(Graphics) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

paintComponent(Graphics) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

paintComponent(Graphics) - Method in class tech.molecules.leet.table.NexusTable.JCellBackgroundPanel

paintComponent(Graphics) - Method in class tech.molecules.leet.table.NexusTable.JNexusPanel

paintComponent(Graphics) - Method in class tech.molecules.leet.table.NexusTable

paintComponent(Graphics) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn.CalcPropertiesRenderer.JColorLabel

PaintScaleFromColormap(Colormap, double, double, double, Color) - Constructor for class tech.molecules.leet.util.ColorMapHelper.PaintScaleFromColormap

PairwiseDistanceColumn - Class in tech.molecules.leet.table

PairwiseDistanceColumn(Map<String, Integer>, double[][], boolean, boolean, boolean) - Constructor for class tech.molecules.leet.table.PairwiseDistanceColumn

panel - Variable in class tech.molecules.leet.table.NexusTable.NexusInteractiveEditorInfrastructure

performAction() - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

PopupHelper - Class in tech.molecules.leet.table.gui

PopupHelper() - Constructor for class tech.molecules.leet.table.gui.PopupHelper

postprocess(DWARFileParser) - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

postprocess(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

postprocess(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

postprocess(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

prepare(DWARFileParser) - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

prepare(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

prepare(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

prepare(DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

R

readLine(String, DWARFileParser) - Method in interface tech.molecules.leet.table.io.DWARSimpleWrapper.DWARColumnImporter

readLine(String, DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.MultiNumericColumnImporter

readLine(String, DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

readLine(String, DWARFileParser) - Method in class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

registerSelectionType(NexusTableModel.SelectionType) - Method in class tech.molecules.leet.table.NexusTableModel

returns false if type was already registered

reinitPlot() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

removeChangeListener(ChangeListener) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

removeChangeListener(DatasetChangeListener) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

removeChangeListener(DatasetChangeListener) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

removeClass(NClassification.NClass) - Method in class tech.molecules.leet.clustering.ClusterAppModel

removeClass(NClassification.NClass) - Method in class tech.molecules.leet.table.DefaultClustering

removeClass(NClassification.NClass) - Method in interface tech.molecules.leet.table.NClassification

removeClassificationListener(NClassification.ClassificationListener) - Method in class tech.molecules.leet.clustering.ClusterAppModel

removeClassificationListener(NClassification.ClassificationListener) - Method in class tech.molecules.leet.table.DefaultClustering

removeClassificationListener(NClassification.ClassificationListener) - Method in interface tech.molecules.leet.table.NClassification

removeClusterAppModelListener(ClusterAppModel.ClusterAppModelListener) - Method in class tech.molecules.leet.clustering.ClusterAppModel

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.ClassificationColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in interface tech.molecules.leet.table.NColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StringColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

removeColumnDataListener(NColumn.ColumnDataListener) - Method in class tech.molecules.leet.table.StructureColumn

removeFilter(NColumn.NexusRowFilter) - Method in class tech.molecules.leet.table.gui.JFilterPanel

removeModel(ScatterPlotModel) - Method in class tech.molecules.leet.table.chart.JScatterPlotConfigurationMenuBar

removeModelListener(JStructureSelectionPanel.StructureSelectionModel.ModelListener) - Method in class tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel

removeNexusColumn(NColumn) - Method in class tech.molecules.leet.table.NexusTableModel

removeNexusListener(NexusTableModel.NexusTableModelListener) - Method in class tech.molecules.leet.table.NexusTableModel

removeScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

removeScatterPlotListener(JFreeChartScatterPlot.ScatterPlotListener) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

removeSelectionTypeFromRows(NexusTableModel.SelectionType, Collection<String>) - Method in class tech.molecules.leet.table.NexusTableModel

resetFilters() - Method in class tech.molecules.leet.table.NexusTableModel

ROW_FILTER_SS - Static variable in class tech.molecules.leet.table.StructureColumn

S

ScatterPlotModel - Class in tech.molecules.leet.table.chart

ScatterPlotModel(NexusTableModel, KeyedValuesDataset, KeyedValuesDataset) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel

ScatterPlotModel(NexusTableModel, NumericalDatasource, NumericalDatasource) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel

ScatterPlotModel.NumericalDatasourceKeyedDataset<U> - Class in tech.molecules.leet.table.chart

ScatterPlotModel.ScatterPlotListener - Interface in tech.molecules.leet.table.chart

ScatterPlotModel.SetClusteringAnnotationsAction - Class in tech.molecules.leet.table.chart

ScatterPlotModel.SetColorNumericalDatasource - Class in tech.molecules.leet.table.chart

ScatterPlotModel.SetPointSizeAction - Class in tech.molecules.leet.table.chart

select(boolean) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

SELECTION_TYPE_MOUSE_OVER - Static variable in class tech.molecules.leet.table.NexusTableModel

SELECTION_TYPE_SELECTED - Static variable in class tech.molecules.leet.table.NexusTableModel

selectionChanged() - Method in interface tech.molecules.leet.similarity.gui.UmapViewModel.UmapViewListener

selectionChanged() - Method in interface tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SelectionListener

selectionChanged(NexusTableModel.NexusSelectionChangedEvent) - Method in interface tech.molecules.leet.clustering.ClusterAppModel.ClusterAppModelListener

selectionChanged(NexusTableModel.NexusSelectionChangedEvent) - Method in interface tech.molecules.leet.table.chart.JFreeChartScatterPlot.ScatterPlotListener

selectionChanged(NexusTableModel.NexusSelectionChangedEvent) - Method in interface tech.molecules.leet.table.chart.ScatterPlotModel.ScatterPlotListener

selectionColor - Variable in class tech.molecules.leet.table.NexusTableModel.NexusHighlightingAndSelectionStatus

SelectionType(String, Color) - Constructor for class tech.molecules.leet.table.NexusTableModel.SelectionType

setAB(double, double) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

setAllRows(List<String>) - Method in class tech.molecules.leet.table.NexusTableModel

setAlternateRowBackground(boolean) - Method in class tech.molecules.leet.table.gui.LeetChemistryCellRenderer

setBackgroundColors(List<Color>) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

SetClusteringAnnotationsAction(String, List<Pair<Color, List<String>>>) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetClusteringAnnotationsAction

SetClusteringAnnotationsAction(String, List<Pair<Color, List<String>>>) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel.SetClusteringAnnotationsAction

setColor(Color) - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

setColor(Color) - Method in class tech.molecules.leet.table.DefaultClustering.DefaultClass

setColor(Color) - Method in interface tech.molecules.leet.table.NClassification.NClass

setColor(DefaultKeyedValuesDataset) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setColor(DefaultKeyedValuesDataset) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setColorExpclicit(PaintScale, Map<String, Integer>) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

SetColoringAction(String, Map<String, Double>) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetColoringAction

setColoringByNexusColumn(NColumn) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setColormap(Colormap) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setColormap(Colormap) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

SetColormapAction(String, Colormap) - Constructor for class tech.molecules.leet.table.chart.JFreeChartScatterPlot.SetColormapAction

SetColorNumericalDatasource(List<ScatterPlotModel>, NumericalDatasource) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel.SetColorNumericalDatasource

setColorValues(Map<String, Double>) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setColorValues(Map<String, Double>) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setColorValues(NumericalDatasource) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setComponentPopupMenu(JPopupMenu) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

setConfig(CreateXYScatterPlotActionConfig) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionGUI

setConfig(CreateXYScatterPlotActionConfig) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionModel

setConsideredCounts(List<ChemPropertyCounts.ChemPropertyCount>) - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

setContextMenu(JPopupMenu) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setContextMenu(JPopupMenu) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel

setData(List<NDataProvider.StructureWithID>, int, int, Map<String, List<Color>>, List<Pair<String, Map<String, String>>>, List<Triple<String, Map<String, Double>, Colormap>>) - Method in class tech.molecules.leet.table.gui.JStructureGridPanel

setDataProvider(NSynthonWithContextDataProvider) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

setDataProvider(NDataProvider.ClassificationProvider) - Method in class tech.molecules.leet.table.ClassificationColumn

setDataProvider(NDataProvider.NMultiNumericDataProvider) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

setDataProvider(NDataProvider.NStringDataProvider) - Method in class tech.molecules.leet.table.StringColumn

setDataProvider(NDataProvider.StructureDataProvider) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

setDataProvider(NDataProvider.StructureDataProvider) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

setDataProvider(NStructureDataProvider) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

setDataProvider(NStructureDataProvider) - Method in class tech.molecules.leet.table.StructureColumn

setDataProvider(U) - Method in interface tech.molecules.leet.table.NColumn

setDataProviderForColumn(NColumn<U, T>, U) - Method in class tech.molecules.leet.table.NexusTableModel

setDescription(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

setFilterStructure(StereoMolecule) - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

setGroup(DatasetGroup) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot.NumericalDatasourceKeyedDataset

setGroup(DatasetGroup) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel.NumericalDatasourceKeyedDataset

setHighlight(Set<String>, boolean) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setHighlight(Set<String>, boolean) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setHighlightColors(Map<String, Color>) - Method in class tech.molecules.leet.table.NexusTableModel

setHighlighted(List<String>) - Method in class tech.molecules.leet.clustering.ClusterAppModel

setHighlightNNearestNeighbors(int) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

set to -1 to deactivate

setHighlightNNearestNeighbors(int) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

set to -1 to deactivate

setKeyedXY(KeyedValuesDataset, KeyedValuesDataset) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYDataset

setKeyedXYZ(KeyedValuesDataset, KeyedValuesDataset, KeyedValuesDataset) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

setListSelectionColor(Color) - Method in class tech.molecules.leet.table.NexusTable

setMinimized(boolean) - Method in class tech.molecules.leet.table.gui.JFilterPanel

setModel(NexusTableModel) - Method in class tech.molecules.leet.table.NexusTable

setMouseOverClass(NexusTableModel.SelectionType) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setMouseOverHighlightingEventColor(boolean, Color) - Method in class tech.molecules.leet.table.NexusTable

setMultipleAnnotations(Map<String, List<Integer>>, Map<Integer, Paint>) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

setMultipleAnnotations(Map<String, List<Integer>>, Map<Integer, Paint>) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setName(String) - Method in class tech.molecules.leet.clustering.ClusterAppModel.Cluster

setNd_color(NumericalDatasource) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

setNd_x(NumericalDatasource) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

setNd_y(NumericalDatasource) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

setNexusColumnsWithDataProviders(List<Pair<NColumn, NDataProvider>>) - Method in class tech.molecules.leet.table.NexusTableModel

setNexusColumnWithDataProvider(int, Pair<NColumn, NDataProvider>) - Method in class tech.molecules.leet.table.NexusTableModel

setPlotPanel(JPanel) - Method in class tech.molecules.leet.table.action.CreateXYScatterPlotActionConfig

SetPointSizeAction(List<ScatterPlotModel>, int) - Constructor for class tech.molecules.leet.table.chart.ScatterPlotModel.SetPointSizeAction

setRange(double, double) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

setRemoveConnectors(boolean) - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

setRendererShapeSize(int) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setRowId(Supplier<List<String>>) - Method in class tech.molecules.leet.table.NColumn.CellSpecificAction

setSelectedDatasource(NumericalDatasource) - Method in class tech.molecules.leet.table.gui.JNumericalDataSourceSelector.NumericalDataSourceSelectorModel

setSelection(List<String>) - Method in class tech.molecules.leet.clustering.ClusterAppModel

setSelection(Set<String>) - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

Note: calling this method does NOT fire any events in ClusterAppModel

setSelection(Set<String>) - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

Note: calling this method does NOT fire any events in ClusterAppModel

setSliderManually(int) - Method in class tech.molecules.leet.table.gui.JNexusTopPanel

setTableSelectedRowForPopup(JTable, JPopupMenu) - Static method in class tech.molecules.leet.table.gui.PopupHelper

setupFilter(NexusTableModel, T) - Method in class tech.molecules.leet.table.DefaultNumericRangeFilter

setupFilter(NexusTableModel, NStructureDataProvider) - Method in class tech.molecules.leet.table.chem.NexusChemPropertiesFilter

setupFilter(NexusTableModel, NStructureDataProvider) - Method in class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

setupFilter(NexusTableModel, U) - Method in interface tech.molecules.leet.table.NColumn.NexusRowFilter

setWithoutAxisAndLegend() - Method in class tech.molecules.leet.table.chart.ScatterPlotModel

setZ(KeyedValuesDataset) - Method in class tech.molecules.leet.table.chart.XYChartCreator.CombinedKeyedXYZDataset

SHOW - tech.molecules.leet.table.chem.NSynthonWithContextColumn.SYNTHON_COLUMN_MODE

SHOW_ASSEMBLED - tech.molecules.leet.table.chem.NSynthonWithContextColumn.SYNTHON_COLUMN_MODE

showDialog(Component, ClusterAppModel.Cluster) - Static method in class tech.molecules.leet.clustering.gui.JClusterAndColorConfig

showDialog(Component, DefaultClustering.DefaultClass) - Static method in class tech.molecules.leet.table.gui.JClusterAndColorConfig

showImportDialog() - Static method in class tech.molecules.leet.table.io.JDWARImportPanel

SimilarityProvider<U> - Interface in tech.molecules.leet.table

SpectrumPaintScale(double, double) - Constructor for class tech.molecules.leet.util.ColorMapHelper.SpectrumPaintScale

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.chem.NSynthonWithContextColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.ClassificationColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.FixedNumericalDataColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.MultiNumericDataColumn

startAsyncReinitialization(NexusTableModel) - Method in interface tech.molecules.leet.table.NColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.PairwiseDistanceColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.StringColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

startAsyncReinitialization(NexusTableModel) - Method in class tech.molecules.leet.table.StructureColumn

StringColumn - Class in tech.molecules.leet.table

StringColumn(String) - Constructor for class tech.molecules.leet.table.StringColumn

StringColumnImporter(String, boolean) - Constructor for class tech.molecules.leet.table.io.DWARSimpleWrapper.StringColumnImporter

structure - Variable in class tech.molecules.leet.table.NDataProvider.StructureWithID

StructureCalculatedPropertiesColumn - Class in tech.molecules.leet.table

StructureCalculatedPropertiesColumn() - Constructor for class tech.molecules.leet.table.StructureCalculatedPropertiesColumn

StructureCalculatedPropertiesColumn.CalcPropertiesRenderer - Class in tech.molecules.leet.table

StructureCalculatedPropertiesColumn.CalcPropertiesRenderer.JColorLabel - Class in tech.molecules.leet.table

StructureCalculatedPropertiesColumn.CalculatedProperties - Class in tech.molecules.leet.table

StructureCalculatedPropertiesColumn.ChemPropertyCountDatasource - Class in tech.molecules.leet.table

StructureCellRenderer() - Constructor for class tech.molecules.leet.table.StructureColumn.StructureCellRenderer

StructureColumn - Class in tech.molecules.leet.table

StructureColumn(boolean) - Constructor for class tech.molecules.leet.table.StructureColumn

StructureColumn.StructureCellRenderer - Class in tech.molecules.leet.table

StructureColumn.SubstructureRowFilter - Class in tech.molecules.leet.table

StructureColumnImporter(String, boolean) - Constructor for class tech.molecules.leet.table.io.DWARSimpleWrapper.StructureColumnImporter

StructureDataProviderFromColumn(U, NColumn<U, NDataProvider.StructureWithID>) - Constructor for class tech.molecules.leet.table.NDataProvider.StructureDataProviderFromColumn

StructureSelectionModel(UmapViewModel) - Constructor for class tech.molecules.leet.clustering.gui.JStructureSelectionPanel.StructureSelectionModel

StructureWithID(String, String, String[]) - Constructor for class tech.molecules.leet.table.NDataProvider.StructureWithID

SubstructureRowFilter() - Constructor for class tech.molecules.leet.table.StructureColumn.SubstructureRowFilter

SynthonStructureWithID(SynthonWithContext) - Constructor for class tech.molecules.leet.table.chem.NSynthonWithContextDataProvider.SynthonStructureWithID

T

tech.molecules - package tech.molecules

tech.molecules.leet.clustering - package tech.molecules.leet.clustering

tech.molecules.leet.clustering.action - package tech.molecules.leet.clustering.action

tech.molecules.leet.clustering.gui - package tech.molecules.leet.clustering.gui

tech.molecules.leet.histogram - package tech.molecules.leet.histogram

tech.molecules.leet.similarity - package tech.molecules.leet.similarity

tech.molecules.leet.similarity.gui - package tech.molecules.leet.similarity.gui

tech.molecules.leet.table - package tech.molecules.leet.table

tech.molecules.leet.table.action - package tech.molecules.leet.table.action

tech.molecules.leet.table.chart - package tech.molecules.leet.table.chart

tech.molecules.leet.table.chem - package tech.molecules.leet.table.chem

tech.molecules.leet.table.gui - package tech.molecules.leet.table.gui

tech.molecules.leet.table.io - package tech.molecules.leet.table.io

tech.molecules.leet.util - package tech.molecules.leet.util

tech.molecules.leet.workbench - package tech.molecules.leet.workbench

toggleSelection() - Method in class tech.molecules.leet.table.gui.JStructureGridPanel.JGridPanel

toString() - Method in class tech.molecules.leet.table.io.JDWARImportPanel.ImportOption

transformRangePosToX(double) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

transformXToRangePos(double) - Method in class tech.molecules.leet.table.gui.JSlimRangeSlider

Tree - tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SELECTOR_MODE

U

UMapHelper - Class in tech.molecules.leet.similarity

UMapHelper() - Constructor for class tech.molecules.leet.similarity.UMapHelper

UMapHelper.UMapXYChartConfig - Class in tech.molecules.leet.similarity

UmapViewModel - Class in tech.molecules.leet.similarity.gui

UmapViewModel(ClusterAppModel) - Constructor for class tech.molecules.leet.similarity.gui.UmapViewModel

UmapViewModel.UmapViewListener - Interface in tech.molecules.leet.similarity.gui

UMapXYChartConfig(NStructureDataProvider, NSimilarityColumn) - Constructor for class tech.molecules.leet.similarity.UMapHelper.UMapXYChartConfig

updateColumns() - Method in class tech.molecules.leet.table.NexusTable

updateData() - Method in class tech.molecules.leet.table.gui.JNexusTopPanel

updateFiltering() - Method in class tech.molecules.leet.table.NexusTableModel

updatePlot() - Method in class tech.molecules.leet.table.chart.JFreeChartScatterPlot

V

valueOf(String) - Static method in enum tech.molecules.leet.table.chart.JFreeChartScatterPlot.LASSO_STATE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum tech.molecules.leet.table.chem.NSynthonWithContextColumn.SYNTHON_COLUMN_MODE

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SELECTOR_MODE

Returns the enum constant of this type with the specified name.

values() - Static method in enum tech.molecules.leet.table.chart.JFreeChartScatterPlot.LASSO_STATE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum tech.molecules.leet.table.chem.NSynthonWithContextColumn.SYNTHON_COLUMN_MODE

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum tech.molecules.leet.table.gui.JNumericalDataSourceSelector.SELECTOR_MODE

Returns an array containing the constants of this enum type, in the order they are declared.

W

wasOK() - Method in class tech.molecules.leet.clustering.gui.JClusterAndColorConfig

wasOK() - Method in class tech.molecules.leet.table.gui.JClusterAndColorConfig

WorkbenchModel - Class in tech.molecules.leet.workbench

WorkbenchModel(NexusTableModel) - Constructor for class tech.molecules.leet.workbench.WorkbenchModel

X

xCol - Variable in class tech.molecules.leet.similarity.UMapHelper.UMapXYChartConfig

xCol - Variable in class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

xDS - Variable in class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

XYChartConfig(NDataProvider, NColumn, String, NColumn, String) - Constructor for class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

XYChartCreator - Class in tech.molecules.leet.table.chart

XYChartCreator() - Constructor for class tech.molecules.leet.table.chart.XYChartCreator

XYChartCreator.CombinedKeyedXYDataset<T extends Comparable> - Class in tech.molecules.leet.table.chart

XYChartCreator.CombinedKeyedXYZDataset<T extends Comparable> - Class in tech.molecules.leet.table.chart

XYChartCreator.XYChartConfig - Class in tech.molecules.leet.table.chart

Y

yCol - Variable in class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

yDS - Variable in class tech.molecules.leet.table.chart.XYChartCreator.XYChartConfig

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