uk.ac.manchester.cs.owl.owlapi.concurrent

Class ConcurrentOWLOntologyImpl

java.lang.Object

uk.ac.manchester.cs.owl.owlapi.concurrent.ConcurrentOWLOntologyImpl

All Implemented Interfaces:

Serializable, Comparable<OWLObject>, HasAnnotationPropertiesInSignature, HasAnnotations, HasAnonymousIndividuals, HasApplyChange, HasApplyChanges, HasAxioms, HasAxiomsByType, HasClassesInSignature, HasContainsAxiom, HasContainsEntityInSignature, HasDataPropertiesInSignature, HasDatatypesInSignature, HasDirectAddAxiom, HasDirectAddAxioms, HasDirectImports, HasGetEntitiesInSignature, HasImportsClosure, HasIndividualsInSignature, HasLogicalAxioms, HasObjectPropertiesInSignature, HasOntologyID, HasSignature, IsAnonymous, OWLAxiomCollection, OWLAxiomCollectionBooleanArgs, OWLAxiomCollectionNoArgs, OWLAxiomIndex, OWLMutableOntology, OWLObject, OWLOntology, OWLSignature, OWLSignatureBooleanArgs, HasTrimToSize

public class ConcurrentOWLOntologyImpl
extends Object
implements OWLMutableOntology, HasTrimToSize

Matthew Horridge Stanford Center for Biomedical Informatics Research 03/04/15

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
ConcurrentOWLOntologyImpl(OWLOntology delegate, ReadWriteLock readWriteLock) Constructs a ConcurrentOWLOntology that provides concurrent access to a delegate OWLOntology.

Method Summary

Modifier and Type	Method and Description
void	accept(OWLNamedObjectVisitor owlNamedObjectVisitor)
<O> O	accept(OWLNamedObjectVisitorEx<O> owlNamedObjectVisitorEx)
void	accept(OWLObjectVisitor owlObjectVisitor)
<O> O	accept(OWLObjectVisitorEx<O> owlObjectVisitorEx)
ChangeApplied	addAxiom(OWLAxiom owlAxiom)
ChangeApplied	addAxioms(Set<? extends OWLAxiom> set)
ChangeApplied	applyChange(OWLOntologyChange owlOntologyChange)
ChangeApplied	applyChanges(List<? extends OWLOntologyChange> list)
ChangeDetails	applyChangesAndGetDetails(List<? extends OWLOntologyChange> list)
int	compareTo(OWLObject o)
boolean	contains(OWLAxiomSearchFilter owlAxiomSearchFilter, Object o, Imports imports)
boolean	containsAnnotationPropertyInSignature(IRI iri)
boolean	containsAnnotationPropertyInSignature(IRI iri, boolean b) Deprecated.
boolean	containsAnnotationPropertyInSignature(IRI iri, Imports imports)
boolean	containsAxiom(OWLAxiom owlAxiom)
boolean	containsAxiom(OWLAxiom owlAxiom, boolean b) Deprecated.
boolean	containsAxiom(OWLAxiom owlAxiom, Imports imports, AxiomAnnotations axiomAnnotations)
boolean	containsAxiomIgnoreAnnotations(OWLAxiom owlAxiom)
boolean	containsAxiomIgnoreAnnotations(OWLAxiom owlAxiom, boolean b) Deprecated.
boolean	containsClassInSignature(IRI iri)
boolean	containsClassInSignature(IRI iri, boolean b) Deprecated.
boolean	containsClassInSignature(IRI iri, Imports imports)
boolean	containsDataPropertyInSignature(IRI iri)
boolean	containsDataPropertyInSignature(IRI iri, boolean b) Deprecated.
boolean	containsDataPropertyInSignature(IRI iri, Imports imports)
boolean	containsDatatypeInSignature(IRI iri)
boolean	containsDatatypeInSignature(IRI iri, boolean b) Deprecated.
boolean	containsDatatypeInSignature(IRI iri, Imports imports)
boolean	containsEntitiesOfTypeInSignature(EntityType<?> type)
boolean	containsEntitiesOfTypeInSignature(EntityType<?> type, Imports includeImportsClosure)
boolean	containsEntityInSignature(IRI iri)
boolean	containsEntityInSignature(IRI iri, boolean b) Deprecated.
boolean	containsEntityInSignature(IRI iri, Imports imports)
boolean	containsEntityInSignature(OWLEntity owlEntity)
boolean	containsEntityInSignature(OWLEntity owlEntity, boolean b) Deprecated.
boolean	containsEntityInSignature(OWLEntity owlEntity, Imports imports)
boolean	containsIndividualInSignature(IRI iri)
boolean	containsIndividualInSignature(IRI iri, boolean b) Deprecated.
boolean	containsIndividualInSignature(IRI iri, Imports imports)
boolean	containsObjectPropertyInSignature(IRI iri)
boolean	containsObjectPropertyInSignature(IRI iri, boolean b) Deprecated.
boolean	containsObjectPropertyInSignature(IRI iri, Imports imports)
boolean	containsReference(OWLEntity owlEntity)
boolean	containsReference(OWLEntity owlEntity, boolean b) Deprecated.
boolean	containsReference(OWLEntity owlEntity, Imports imports)
boolean	equals(Object obj)
<T extends OWLAxiom> Collection<T>	filterAxioms(OWLAxiomSearchFilter owlAxiomSearchFilter, Object o, Imports imports)
Set<OWLAxiom>	getABoxAxioms(Imports imports)
Set<OWLAnnotationAssertionAxiom>	getAnnotationAssertionAxioms(OWLAnnotationSubject owlAnnotationSubject)
Set<OWLAnnotationProperty>	getAnnotationPropertiesInSignature()
Set<OWLAnnotationProperty>	getAnnotationPropertiesInSignature(boolean b) Deprecated.
Set<OWLAnnotationProperty>	getAnnotationPropertiesInSignature(Imports imports)
Set<OWLAnnotationPropertyDomainAxiom>	getAnnotationPropertyDomainAxioms(OWLAnnotationProperty owlAnnotationProperty)
Set<OWLAnnotationPropertyRangeAxiom>	getAnnotationPropertyRangeAxioms(OWLAnnotationProperty owlAnnotationProperty)
Set<OWLAnnotation>	getAnnotations()
Set<OWLAnonymousIndividual>	getAnonymousIndividuals()
Set<OWLAsymmetricObjectPropertyAxiom>	getAsymmetricObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
int	getAxiomCount()
<T extends OWLAxiom> int	getAxiomCount(AxiomType<T> axiomType)
<T extends OWLAxiom> int	getAxiomCount(AxiomType<T> axiomType, boolean b) Deprecated.
<T extends OWLAxiom> int	getAxiomCount(AxiomType<T> axiomType, Imports imports)
int	getAxiomCount(boolean b) Deprecated.
int	getAxiomCount(Imports imports)
Set<OWLAxiom>	getAxioms()
<T extends OWLAxiom> Set<T>	getAxioms(AxiomType<T> axiomType)
<T extends OWLAxiom> Set<T>	getAxioms(AxiomType<T> axiomType, boolean b) Deprecated.
<T extends OWLAxiom> Set<T>	getAxioms(AxiomType<T> axiomType, Imports imports)
Set<OWLAxiom>	getAxioms(boolean b) Deprecated.
<T extends OWLAxiom> Set<T>	getAxioms(Class<T> aClass, Class<? extends OWLObject> aClass1, OWLObject owlObject, Imports imports, Navigation navigation)
<T extends OWLAxiom> Set<T>	getAxioms(Class<T> aClass, OWLObject owlObject, Imports imports, Navigation navigation)
Set<OWLAxiom>	getAxioms(Imports imports)
Set<OWLAnnotationAxiom>	getAxioms(OWLAnnotationProperty owlAnnotationProperty) Deprecated.
Set<OWLAnnotationAxiom>	getAxioms(OWLAnnotationProperty owlAnnotationProperty, boolean b) Deprecated.
Set<OWLAnnotationAxiom>	getAxioms(OWLAnnotationProperty owlAnnotationProperty, Imports imports)
Set<OWLClassAxiom>	getAxioms(OWLClass owlClass) Deprecated.
Set<OWLClassAxiom>	getAxioms(OWLClass owlClass, boolean b) Deprecated.
Set<OWLClassAxiom>	getAxioms(OWLClass owlClass, Imports imports)
Set<OWLDataPropertyAxiom>	getAxioms(OWLDataProperty owlDataProperty) Deprecated.
Set<OWLDataPropertyAxiom>	getAxioms(OWLDataProperty owlDataProperty, boolean b) Deprecated.
Set<OWLDataPropertyAxiom>	getAxioms(OWLDataProperty owlDataProperty, Imports imports)
Set<OWLDatatypeDefinitionAxiom>	getAxioms(OWLDatatype owlDatatype) Deprecated.
Set<OWLDatatypeDefinitionAxiom>	getAxioms(OWLDatatype owlDatatype, boolean b) Deprecated.
Set<OWLDatatypeDefinitionAxiom>	getAxioms(OWLDatatype owlDatatype, Imports imports)
Set<OWLIndividualAxiom>	getAxioms(OWLIndividual owlIndividual) Deprecated.
Set<OWLIndividualAxiom>	getAxioms(OWLIndividual owlIndividual, boolean b) Deprecated.
Set<OWLIndividualAxiom>	getAxioms(OWLIndividual owlIndividual, Imports imports)
Set<OWLObjectPropertyAxiom>	getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression) Deprecated.
Set<OWLObjectPropertyAxiom>	getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression, boolean b) Deprecated.
Set<OWLObjectPropertyAxiom>	getAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression, Imports imports)
Set<OWLAxiom>	getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom)
Set<OWLAxiom>	getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom, boolean b) Deprecated.
Set<OWLAxiom>	getAxiomsIgnoreAnnotations(OWLAxiom owlAxiom, Imports imports)
Set<OWLClassAssertionAxiom>	getClassAssertionAxioms(OWLClassExpression owlClassExpression)
Set<OWLClassAssertionAxiom>	getClassAssertionAxioms(OWLIndividual owlIndividual)
Set<OWLClass>	getClassesInSignature()
Set<OWLClass>	getClassesInSignature(boolean b) Deprecated.
Set<OWLClass>	getClassesInSignature(Imports imports)
Set<OWLDataProperty>	getDataPropertiesInSignature()
Set<OWLDataProperty>	getDataPropertiesInSignature(boolean b) Deprecated.
Set<OWLDataProperty>	getDataPropertiesInSignature(Imports imports)
Set<OWLDataPropertyAssertionAxiom>	getDataPropertyAssertionAxioms(OWLIndividual owlIndividual)
Set<OWLDataPropertyDomainAxiom>	getDataPropertyDomainAxioms(OWLDataProperty owlDataProperty)
Set<OWLDataPropertyRangeAxiom>	getDataPropertyRangeAxioms(OWLDataProperty owlDataProperty)
Set<OWLSubDataPropertyOfAxiom>	getDataSubPropertyAxiomsForSubProperty(OWLDataProperty owlDataProperty)
Set<OWLSubDataPropertyOfAxiom>	getDataSubPropertyAxiomsForSuperProperty(OWLDataPropertyExpression owlDataPropertyExpression)
Set<OWLDatatypeDefinitionAxiom>	getDatatypeDefinitions(OWLDatatype owlDatatype)
Set<OWLDatatype>	getDatatypesInSignature()
Set<OWLDatatype>	getDatatypesInSignature(boolean b) Deprecated.
Set<OWLDatatype>	getDatatypesInSignature(Imports imports)
Set<OWLDeclarationAxiom>	getDeclarationAxioms(OWLEntity owlEntity)
Set<OWLDifferentIndividualsAxiom>	getDifferentIndividualAxioms(OWLIndividual owlIndividual)
Set<OWLOntology>	getDirectImports()
Set<IRI>	getDirectImportsDocuments()
Set<OWLDisjointClassesAxiom>	getDisjointClassesAxioms(OWLClass owlClass)
Set<OWLDisjointDataPropertiesAxiom>	getDisjointDataPropertiesAxioms(OWLDataProperty owlDataProperty)
Set<OWLDisjointObjectPropertiesAxiom>	getDisjointObjectPropertiesAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLDisjointUnionAxiom>	getDisjointUnionAxioms(OWLClass owlClass)
Set<OWLEntity>	getEntitiesInSignature(IRI iri)
Set<OWLEntity>	getEntitiesInSignature(IRI iri, boolean b) Deprecated.
Set<OWLEntity>	getEntitiesInSignature(IRI iri, Imports imports)
Set<OWLEquivalentClassesAxiom>	getEquivalentClassesAxioms(OWLClass owlClass)
Set<OWLEquivalentDataPropertiesAxiom>	getEquivalentDataPropertiesAxioms(OWLDataProperty owlDataProperty)
Set<OWLEquivalentObjectPropertiesAxiom>	getEquivalentObjectPropertiesAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLFunctionalDataPropertyAxiom>	getFunctionalDataPropertyAxioms(OWLDataPropertyExpression owlDataPropertyExpression)
Set<OWLFunctionalObjectPropertyAxiom>	getFunctionalObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLClassAxiom>	getGeneralClassAxioms()
Set<OWLHasKeyAxiom>	getHasKeyAxioms(OWLClass owlClass)
Set<OWLOntology>	getImports()
Set<OWLOntology>	getImportsClosure()
Set<OWLImportsDeclaration>	getImportsDeclarations()
Set<OWLNamedIndividual>	getIndividualsInSignature()
Set<OWLNamedIndividual>	getIndividualsInSignature(boolean b) Deprecated.
Set<OWLNamedIndividual>	getIndividualsInSignature(Imports imports)
Set<OWLInverseFunctionalObjectPropertyAxiom>	getInverseFunctionalObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLInverseObjectPropertiesAxiom>	getInverseObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLIrreflexiveObjectPropertyAxiom>	getIrreflexiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
int	getLogicalAxiomCount()
int	getLogicalAxiomCount(boolean b) Deprecated.
int	getLogicalAxiomCount(Imports imports)
Set<OWLLogicalAxiom>	getLogicalAxioms()
Set<OWLLogicalAxiom>	getLogicalAxioms(boolean b) Deprecated.
Set<OWLLogicalAxiom>	getLogicalAxioms(Imports imports)
Set<OWLNegativeDataPropertyAssertionAxiom>	getNegativeDataPropertyAssertionAxioms(OWLIndividual owlIndividual)
Set<OWLNegativeObjectPropertyAssertionAxiom>	getNegativeObjectPropertyAssertionAxioms(OWLIndividual owlIndividual)
Set<OWLClassExpression>	getNestedClassExpressions()
Set<OWLObjectProperty>	getObjectPropertiesInSignature()
Set<OWLObjectProperty>	getObjectPropertiesInSignature(boolean b) Deprecated.
Set<OWLObjectProperty>	getObjectPropertiesInSignature(Imports imports)
Set<OWLObjectPropertyAssertionAxiom>	getObjectPropertyAssertionAxioms(OWLIndividual owlIndividual)
Set<OWLObjectPropertyDomainAxiom>	getObjectPropertyDomainAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLObjectPropertyRangeAxiom>	getObjectPropertyRangeAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLSubObjectPropertyOfAxiom>	getObjectSubPropertyAxiomsForSubProperty(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLSubObjectPropertyOfAxiom>	getObjectSubPropertyAxiomsForSuperProperty(OWLObjectPropertyExpression owlObjectPropertyExpression)
OWLOntologyID	getOntologyID()
OWLOntologyManager	getOWLOntologyManager()
Set<IRI>	getPunnedIRIs(Imports imports)
Set<OWLAxiom>	getRBoxAxioms(Imports imports)
Set<OWLAnonymousIndividual>	getReferencedAnonymousIndividuals(boolean b) Deprecated.
Set<OWLAnonymousIndividual>	getReferencedAnonymousIndividuals(Imports imports)
Set<OWLAxiom>	getReferencingAxioms(OWLPrimitive owlPrimitive)
Set<OWLAxiom>	getReferencingAxioms(OWLPrimitive owlPrimitive, boolean b) Deprecated.
Set<OWLAxiom>	getReferencingAxioms(OWLPrimitive owlPrimitive, Imports imports)
Set<OWLReflexiveObjectPropertyAxiom>	getReflexiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLSameIndividualAxiom>	getSameIndividualAxioms(OWLIndividual owlIndividual)
Set<OWLEntity>	getSignature()
Set<OWLEntity>	getSignature(Imports imports)
Set<OWLSubAnnotationPropertyOfAxiom>	getSubAnnotationPropertyOfAxioms(OWLAnnotationProperty owlAnnotationProperty)
Set<OWLSubClassOfAxiom>	getSubClassAxiomsForSubClass(OWLClass owlClass)
Set<OWLSubClassOfAxiom>	getSubClassAxiomsForSuperClass(OWLClass owlClass)
Set<OWLSymmetricObjectPropertyAxiom>	getSymmetricObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
Set<OWLAxiom>	getTBoxAxioms(Imports imports)
Set<OWLTransitiveObjectPropertyAxiom>	getTransitiveObjectPropertyAxioms(OWLObjectPropertyExpression owlObjectPropertyExpression)
int	hashCode()
boolean	isAnonymous()
boolean	isBottomEntity()
boolean	isDeclared(OWLEntity owlEntity)
boolean	isDeclared(OWLEntity owlEntity, Imports imports)
boolean	isEmpty()
boolean	isTopEntity()
void	saveOntology()
void	saveOntology(IRI iri)
void	saveOntology(OutputStream outputStream)
void	saveOntology(OWLDocumentFormat owlDocumentFormat)
void	saveOntology(OWLDocumentFormat owlDocumentFormat, IRI iri)
void	saveOntology(OWLDocumentFormat owlDocumentFormat, OutputStream outputStream)
void	saveOntology(OWLDocumentFormat owlDocumentFormat, OWLOntologyDocumentTarget owlOntologyDocumentTarget)
void	saveOntology(OWLOntologyDocumentTarget owlOntologyDocumentTarget)
void	setLock(ReadWriteLock lock)
void	setOWLOntologyManager(OWLOntologyManager owlOntologyManager)
String	toString()
void	trimToSize() Trim the capacity of the axiom indexes.

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.semanticweb.owlapi.model.OWLObject

isIndividual, isIRI

Methods inherited from interface org.semanticweb.owlapi.model.IsAnonymous

isNamed

Constructor Detail

ConcurrentOWLOntologyImpl

@Inject
public ConcurrentOWLOntologyImpl(@Nonnull
                                         OWLOntology delegate,
                                         @Nonnull
                                         ReadWriteLock readWriteLock)

Constructs a ConcurrentOWLOntology that provides concurrent access to a delegate OWLOntology.

Parameters:

delegate - The delegate OWLOntology.

readWriteLock - The ReadWriteLock that will provide the locking.

Throws:

NullPointerException - if any parameters are null.

Method Detail

setLock

public void setLock(ReadWriteLock lock)

Specified by:

setLock in interface OWLMutableOntology

trimToSize

public void trimToSize()

Description copied from interface: HasTrimToSize

Trim the capacity of the axiom indexes. An application can use this operation to minimize the storage of the index instance.

Specified by:

trimToSize in interface HasTrimToSize

accept

public void accept(@Nonnull
                   OWLNamedObjectVisitor owlNamedObjectVisitor)

Specified by:

accept in interface OWLOntology

accept

@Nonnull
public <O> O accept(@Nonnull
                             OWLNamedObjectVisitorEx<O> owlNamedObjectVisitorEx)

Specified by:

accept in interface OWLOntology

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

getOWLOntologyManager

@Nonnull
public OWLOntologyManager getOWLOntologyManager()

Specified by:

getOWLOntologyManager in interface OWLOntology

setOWLOntologyManager

public void setOWLOntologyManager(OWLOntologyManager owlOntologyManager)

Specified by:

setOWLOntologyManager in interface OWLOntology

getOntologyID

@Nonnull
public OWLOntologyID getOntologyID()

Specified by:

getOntologyID in interface HasOntologyID

Specified by:

getOntologyID in interface OWLOntology

isAnonymous

public boolean isAnonymous()

Specified by:

isAnonymous in interface IsAnonymous

getAnnotations

@Nonnull
public Set<OWLAnnotation> getAnnotations()

Specified by:

getAnnotations in interface HasAnnotations

Specified by:

getAnnotations in interface OWLOntology

getDirectImportsDocuments

@Nonnull
public Set<IRI> getDirectImportsDocuments()

Specified by:

getDirectImportsDocuments in interface OWLOntology

getDirectImports

@Nonnull
public Set<OWLOntology> getDirectImports()

Specified by:

getDirectImports in interface HasDirectImports

Specified by:

getDirectImports in interface OWLOntology

getImports

@Nonnull
public Set<OWLOntology> getImports()

Specified by:

getImports in interface OWLOntology

getImportsClosure

@Nonnull
public Set<OWLOntology> getImportsClosure()

Specified by:

getImportsClosure in interface HasImportsClosure

Specified by:

getImportsClosure in interface OWLOntology

getImportsDeclarations

@Nonnull
public Set<OWLImportsDeclaration> getImportsDeclarations()

Specified by:

getImportsDeclarations in interface OWLOntology

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface OWLOntology

getTBoxAxioms

@Nonnull
public Set<OWLAxiom> getTBoxAxioms(@Nonnull
                                            Imports imports)

Specified by:

getTBoxAxioms in interface OWLOntology

getABoxAxioms

@Nonnull
public Set<OWLAxiom> getABoxAxioms(@Nonnull
                                            Imports imports)

Specified by:

getABoxAxioms in interface OWLOntology

getRBoxAxioms

@Nonnull
public Set<OWLAxiom> getRBoxAxioms(@Nonnull
                                            Imports imports)

Specified by:

getRBoxAxioms in interface OWLOntology

getGeneralClassAxioms

@Nonnull
public Set<OWLClassAxiom> getGeneralClassAxioms()

Specified by:

getGeneralClassAxioms in interface OWLOntology

getSignature

@Nonnull
public Set<OWLEntity> getSignature()

Specified by:

getSignature in interface HasSignature

Specified by:

getSignature in interface OWLOntology

getSignature

@Nonnull
public Set<OWLEntity> getSignature(@Nonnull
                                            Imports imports)

Specified by:

getSignature in interface OWLOntology

isDeclared

public boolean isDeclared(@Nonnull
                          OWLEntity owlEntity)

Specified by:

isDeclared in interface OWLOntology

isDeclared

public boolean isDeclared(@Nonnull
                          OWLEntity owlEntity,
                          @Nonnull
                          Imports imports)

Specified by:

isDeclared in interface OWLOntology

saveOntology

public void saveOntology()
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         IRI iri)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OutputStream outputStream)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         IRI iri)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         OutputStream outputStream)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OWLOntologyDocumentTarget owlOntologyDocumentTarget)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

saveOntology

public void saveOntology(@Nonnull
                         OWLDocumentFormat owlDocumentFormat,
                         @Nonnull
                         OWLOntologyDocumentTarget owlOntologyDocumentTarget)
                  throws OWLOntologyStorageException

Specified by:

saveOntology in interface OWLOntology

Throws:

OWLOntologyStorageException

getNestedClassExpressions

@Nonnull
public Set<OWLClassExpression> getNestedClassExpressions()

Specified by:

getNestedClassExpressions in interface OWLObject

accept

public void accept(@Nonnull
                   OWLObjectVisitor owlObjectVisitor)

Specified by:

accept in interface OWLObject

accept

@Nonnull
public <O> O accept(@Nonnull
                             OWLObjectVisitorEx<O> owlObjectVisitorEx)

Specified by:

accept in interface OWLObject

isTopEntity

public boolean isTopEntity()

Specified by:

isTopEntity in interface OWLObject

isBottomEntity

public boolean isBottomEntity()

Specified by:

isBottomEntity in interface OWLObject

toString

@Nonnull
public String toString()

Specified by:

toString in interface OWLObject

Overrides:

toString in class Object

compareTo

public int compareTo(OWLObject o)

Specified by:

compareTo in interface Comparable<OWLObject>

containsEntityInSignature

public boolean containsEntityInSignature(@Nonnull
                                         OWLEntity owlEntity)

Specified by:

containsEntityInSignature in interface HasContainsEntityInSignature

containsEntitiesOfTypeInSignature

public boolean containsEntitiesOfTypeInSignature(EntityType<?> type)

Specified by:

containsEntitiesOfTypeInSignature in interface OWLSignature

containsEntitiesOfTypeInSignature

public boolean containsEntitiesOfTypeInSignature(EntityType<?> type,
                                                 Imports includeImportsClosure)

Specified by:

containsEntitiesOfTypeInSignature in interface OWLOntology

Specified by:

containsEntitiesOfTypeInSignature in interface OWLSignature

getAnonymousIndividuals

@Nonnull
public Set<OWLAnonymousIndividual> getAnonymousIndividuals()

Specified by:

getAnonymousIndividuals in interface HasAnonymousIndividuals

getClassesInSignature

@Nonnull
public Set<OWLClass> getClassesInSignature()

Specified by:

getClassesInSignature in interface HasClassesInSignature

getObjectPropertiesInSignature

@Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature()

Specified by:

getObjectPropertiesInSignature in interface HasObjectPropertiesInSignature

getDataPropertiesInSignature

@Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature()

Specified by:

getDataPropertiesInSignature in interface HasDataPropertiesInSignature

getIndividualsInSignature

@Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature()

Specified by:

getIndividualsInSignature in interface HasIndividualsInSignature

getDatatypesInSignature

@Nonnull
public Set<OWLDatatype> getDatatypesInSignature()

Specified by:

getDatatypesInSignature in interface HasDatatypesInSignature

getAnnotationPropertiesInSignature

@Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature()

Specified by:

getAnnotationPropertiesInSignature in interface HasAnnotationPropertiesInSignature

getAxioms

@Nonnull
public Set<OWLAxiom> getAxioms(@Nonnull
                                        Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxiomCount

public int getAxiomCount(@Nonnull
                         Imports imports)

Specified by:

getAxiomCount in interface OWLAxiomCollection

getLogicalAxioms

@Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms(@Nonnull
                                                      Imports imports)

Specified by:

getLogicalAxioms in interface OWLAxiomCollection

getLogicalAxiomCount

public int getLogicalAxiomCount(@Nonnull
                                Imports imports)

Specified by:

getLogicalAxiomCount in interface OWLAxiomCollection

getAxioms

@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      AxiomType<T> axiomType,
                                                      @Nonnull
                                                      Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxiomCount

public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                              AxiomType<T> axiomType,
                                              @Nonnull
                                              Imports imports)

Specified by:

getAxiomCount in interface OWLAxiomCollection

containsAxiom

public boolean containsAxiom(@Nonnull
                             OWLAxiom owlAxiom,
                             @Nonnull
                             Imports imports,
                             @Nonnull
                             AxiomAnnotations axiomAnnotations)

Specified by:

containsAxiom in interface OWLAxiomCollection

getAxiomsIgnoreAnnotations

@Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                         OWLAxiom owlAxiom,
                                                         @Nonnull
                                                         Imports imports)

Specified by:

getAxiomsIgnoreAnnotations in interface OWLAxiomCollection

getReferencingAxioms

@Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                   OWLPrimitive owlPrimitive,
                                                   @Nonnull
                                                   Imports imports)

Specified by:

getReferencingAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                             OWLClass owlClass,
                                             @Nonnull
                                             Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                      OWLObjectPropertyExpression owlObjectPropertyExpression,
                                                      @Nonnull
                                                      Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                    OWLDataProperty owlDataProperty,
                                                    @Nonnull
                                                    Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                  OWLIndividual owlIndividual,
                                                  @Nonnull
                                                  Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                  OWLAnnotationProperty owlAnnotationProperty,
                                                  @Nonnull
                                                  Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                          OWLDatatype owlDatatype,
                                                          @Nonnull
                                                          Imports imports)

Specified by:

getAxioms in interface OWLAxiomCollection

getAxioms

@Nonnull
public Set<OWLAxiom> getAxioms()

Specified by:

getAxioms in interface HasAxioms

getLogicalAxioms

@Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms()

Specified by:

getLogicalAxioms in interface HasLogicalAxioms

getAxioms

@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      AxiomType<T> axiomType)

Specified by:

getAxioms in interface HasAxiomsByType

containsAxiom

public boolean containsAxiom(@Nonnull
                             OWLAxiom owlAxiom)

Specified by:

containsAxiom in interface HasContainsAxiom

getAxioms

@Nonnull
 @Deprecated
public Set<OWLAxiom> getAxioms(boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxiomCount

@Deprecated
public int getAxiomCount(boolean b)

Deprecated.

Specified by:

getAxiomCount in interface OWLAxiomCollectionBooleanArgs

getLogicalAxioms

@Deprecated
 @Nonnull
public Set<OWLLogicalAxiom> getLogicalAxioms(boolean b)

Deprecated.

Specified by:

getLogicalAxioms in interface OWLAxiomCollectionBooleanArgs

getLogicalAxiomCount

@Deprecated
public int getLogicalAxiomCount(boolean b)

Deprecated.

Specified by:

getLogicalAxiomCount in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Deprecated
 @Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                                   AxiomType<T> axiomType,
                                                                   boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxiomCount

@Deprecated
public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                                          AxiomType<T> axiomType,
                                                          boolean b)

Deprecated.

Specified by:

getAxiomCount in interface OWLAxiomCollectionBooleanArgs

containsAxiom

@Deprecated
public boolean containsAxiom(@Nonnull
                                         OWLAxiom owlAxiom,
                                         boolean b)

Deprecated.

Specified by:

containsAxiom in interface OWLAxiomCollectionBooleanArgs

containsAxiomIgnoreAnnotations

@Deprecated
public boolean containsAxiomIgnoreAnnotations(@Nonnull
                                                          OWLAxiom owlAxiom,
                                                          boolean b)

Deprecated.

Specified by:

containsAxiomIgnoreAnnotations in interface OWLAxiomCollectionBooleanArgs

getAxiomsIgnoreAnnotations

@Deprecated
 @Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                                      OWLAxiom owlAxiom,
                                                                      boolean b)

Deprecated.

Specified by:

getAxiomsIgnoreAnnotations in interface OWLAxiomCollectionBooleanArgs

getReferencingAxioms

@Deprecated
 @Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                                OWLPrimitive owlPrimitive,
                                                                boolean b)

Deprecated.

Specified by:

getReferencingAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                                          OWLClass owlClass,
                                                          boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                                   OWLObjectPropertyExpression owlObjectPropertyExpression,
                                                                   boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                                 OWLDataProperty owlDataProperty,
                                                                 boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                               OWLIndividual owlIndividual,
                                                               boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                               OWLAnnotationProperty owlAnnotationProperty,
                                                               boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                                       OWLDatatype owlDatatype,
                                                                       boolean b)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionBooleanArgs

getAxiomCount

public int getAxiomCount()

Specified by:

getAxiomCount in interface OWLAxiomCollectionNoArgs

getLogicalAxiomCount

public int getLogicalAxiomCount()

Specified by:

getLogicalAxiomCount in interface OWLAxiomCollectionNoArgs

getAxiomCount

public <T extends OWLAxiom> int getAxiomCount(@Nonnull
                                              AxiomType<T> axiomType)

Specified by:

getAxiomCount in interface OWLAxiomCollectionNoArgs

containsAxiomIgnoreAnnotations

public boolean containsAxiomIgnoreAnnotations(@Nonnull
                                              OWLAxiom owlAxiom)

Specified by:

containsAxiomIgnoreAnnotations in interface OWLAxiomCollectionNoArgs

getAxiomsIgnoreAnnotations

@Nonnull
public Set<OWLAxiom> getAxiomsIgnoreAnnotations(@Nonnull
                                                         OWLAxiom owlAxiom)

Specified by:

getAxiomsIgnoreAnnotations in interface OWLAxiomCollectionNoArgs

getReferencingAxioms

@Nonnull
public Set<OWLAxiom> getReferencingAxioms(@Nonnull
                                                   OWLPrimitive owlPrimitive)

Specified by:

getReferencingAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLClassAxiom> getAxioms(@Nonnull
                                                          OWLClass owlClass)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLObjectPropertyAxiom> getAxioms(@Nonnull
                                                                   OWLObjectPropertyExpression owlObjectPropertyExpression)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLDataPropertyAxiom> getAxioms(@Nonnull
                                                                 OWLDataProperty owlDataProperty)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLIndividualAxiom> getAxioms(@Nonnull
                                                               OWLIndividual owlIndividual)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLAnnotationAxiom> getAxioms(@Nonnull
                                                               OWLAnnotationProperty owlAnnotationProperty)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getAxioms

@Nonnull
 @Deprecated
public Set<OWLDatatypeDefinitionAxiom> getAxioms(@Nonnull
                                                                       OWLDatatype owlDatatype)

Deprecated.

Specified by:

getAxioms in interface OWLAxiomCollectionNoArgs

getClassesInSignature

@Nonnull
public Set<OWLClass> getClassesInSignature(@Nonnull
                                                    Imports imports)

Specified by:

getClassesInSignature in interface OWLSignature

getObjectPropertiesInSignature

@Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature(@Nonnull
                                                                      Imports imports)

Specified by:

getObjectPropertiesInSignature in interface OWLSignature

getDataPropertiesInSignature

@Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature(@Nonnull
                                                                  Imports imports)

Specified by:

getDataPropertiesInSignature in interface OWLSignature

getIndividualsInSignature

@Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature(@Nonnull
                                                                  Imports imports)

Specified by:

getIndividualsInSignature in interface OWLSignature

getReferencedAnonymousIndividuals

@Nonnull
public Set<OWLAnonymousIndividual> getReferencedAnonymousIndividuals(@Nonnull
                                                                              Imports imports)

Specified by:

getReferencedAnonymousIndividuals in interface OWLSignature

getDatatypesInSignature

@Nonnull
public Set<OWLDatatype> getDatatypesInSignature(@Nonnull
                                                         Imports imports)

Specified by:

getDatatypesInSignature in interface OWLSignature

getAnnotationPropertiesInSignature

@Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature(@Nonnull
                                                                              Imports imports)

Specified by:

getAnnotationPropertiesInSignature in interface OWLSignature

containsEntityInSignature

public boolean containsEntityInSignature(@Nonnull
                                         OWLEntity owlEntity,
                                         @Nonnull
                                         Imports imports)

Specified by:

containsEntityInSignature in interface OWLSignature

containsEntityInSignature

public boolean containsEntityInSignature(@Nonnull
                                         IRI iri,
                                         @Nonnull
                                         Imports imports)

Specified by:

containsEntityInSignature in interface OWLSignature

containsClassInSignature

public boolean containsClassInSignature(@Nonnull
                                        IRI iri,
                                        @Nonnull
                                        Imports imports)

Specified by:

containsClassInSignature in interface OWLSignature

containsObjectPropertyInSignature

public boolean containsObjectPropertyInSignature(@Nonnull
                                                 IRI iri,
                                                 @Nonnull
                                                 Imports imports)

Specified by:

containsObjectPropertyInSignature in interface OWLSignature

containsDataPropertyInSignature

public boolean containsDataPropertyInSignature(@Nonnull
                                               IRI iri,
                                               @Nonnull
                                               Imports imports)

Specified by:

containsDataPropertyInSignature in interface OWLSignature

containsAnnotationPropertyInSignature

public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                     IRI iri,
                                                     @Nonnull
                                                     Imports imports)

Specified by:

containsAnnotationPropertyInSignature in interface OWLSignature

containsDatatypeInSignature

public boolean containsDatatypeInSignature(@Nonnull
                                           IRI iri,
                                           @Nonnull
                                           Imports imports)

Specified by:

containsDatatypeInSignature in interface OWLSignature

containsIndividualInSignature

public boolean containsIndividualInSignature(@Nonnull
                                             IRI iri,
                                             @Nonnull
                                             Imports imports)

Specified by:

containsIndividualInSignature in interface OWLSignature

containsDatatypeInSignature

public boolean containsDatatypeInSignature(@Nonnull
                                           IRI iri)

Specified by:

containsDatatypeInSignature in interface OWLSignature

containsEntityInSignature

public boolean containsEntityInSignature(@Nonnull
                                         IRI iri)

Specified by:

containsEntityInSignature in interface OWLSignature

containsClassInSignature

public boolean containsClassInSignature(@Nonnull
                                        IRI iri)

Specified by:

containsClassInSignature in interface OWLSignature

containsObjectPropertyInSignature

public boolean containsObjectPropertyInSignature(@Nonnull
                                                 IRI iri)

Specified by:

containsObjectPropertyInSignature in interface OWLSignature

containsDataPropertyInSignature

public boolean containsDataPropertyInSignature(@Nonnull
                                               IRI iri)

Specified by:

containsDataPropertyInSignature in interface OWLSignature

containsAnnotationPropertyInSignature

public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                     IRI iri)

Specified by:

containsAnnotationPropertyInSignature in interface OWLSignature

containsIndividualInSignature

public boolean containsIndividualInSignature(@Nonnull
                                             IRI iri)

Specified by:

containsIndividualInSignature in interface OWLSignature

getEntitiesInSignature

@Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                      IRI iri,
                                                      @Nonnull
                                                      Imports imports)

Specified by:

getEntitiesInSignature in interface OWLSignature

getPunnedIRIs

public Set<IRI> getPunnedIRIs(@Nonnull
                              Imports imports)

Specified by:

getPunnedIRIs in interface OWLSignature

containsReference

public boolean containsReference(@Nonnull
                                 OWLEntity owlEntity,
                                 @Nonnull
                                 Imports imports)

Specified by:

containsReference in interface OWLSignature

containsReference

public boolean containsReference(@Nonnull
                                 OWLEntity owlEntity)

Specified by:

containsReference in interface OWLSignature

getEntitiesInSignature

@Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                      IRI iri)

Specified by:

getEntitiesInSignature in interface HasGetEntitiesInSignature

getClassesInSignature

@Deprecated
 @Nonnull
public Set<OWLClass> getClassesInSignature(boolean b)

Deprecated.

Specified by:

getClassesInSignature in interface OWLSignatureBooleanArgs

getObjectPropertiesInSignature

@Deprecated
 @Nonnull
public Set<OWLObjectProperty> getObjectPropertiesInSignature(boolean b)

Deprecated.

Specified by:

getObjectPropertiesInSignature in interface OWLSignatureBooleanArgs

getDataPropertiesInSignature

@Deprecated
 @Nonnull
public Set<OWLDataProperty> getDataPropertiesInSignature(boolean b)

Deprecated.

Specified by:

getDataPropertiesInSignature in interface OWLSignatureBooleanArgs

getIndividualsInSignature

@Deprecated
 @Nonnull
public Set<OWLNamedIndividual> getIndividualsInSignature(boolean b)

Deprecated.

Specified by:

getIndividualsInSignature in interface OWLSignatureBooleanArgs

getReferencedAnonymousIndividuals

@Deprecated
 @Nonnull
public Set<OWLAnonymousIndividual> getReferencedAnonymousIndividuals(boolean b)

Deprecated.

Specified by:

getReferencedAnonymousIndividuals in interface OWLSignatureBooleanArgs

getDatatypesInSignature

@Deprecated
 @Nonnull
public Set<OWLDatatype> getDatatypesInSignature(boolean b)

Deprecated.

Specified by:

getDatatypesInSignature in interface OWLSignatureBooleanArgs

getAnnotationPropertiesInSignature

@Deprecated
 @Nonnull
public Set<OWLAnnotationProperty> getAnnotationPropertiesInSignature(boolean b)

Deprecated.

Specified by:

getAnnotationPropertiesInSignature in interface OWLSignatureBooleanArgs

containsEntityInSignature

@Deprecated
public boolean containsEntityInSignature(@Nonnull
                                                     OWLEntity owlEntity,
                                                     boolean b)

Deprecated.

Specified by:

containsEntityInSignature in interface OWLSignatureBooleanArgs

containsEntityInSignature

@Deprecated
public boolean containsEntityInSignature(@Nonnull
                                                     IRI iri,
                                                     boolean b)

Deprecated.

Specified by:

containsEntityInSignature in interface OWLSignatureBooleanArgs

containsClassInSignature

@Deprecated
public boolean containsClassInSignature(@Nonnull
                                                    IRI iri,
                                                    boolean b)

Deprecated.

Specified by:

containsClassInSignature in interface OWLSignatureBooleanArgs

containsObjectPropertyInSignature

@Deprecated
public boolean containsObjectPropertyInSignature(@Nonnull
                                                             IRI iri,
                                                             boolean b)

Deprecated.

Specified by:

containsObjectPropertyInSignature in interface OWLSignatureBooleanArgs

containsDataPropertyInSignature

@Deprecated
public boolean containsDataPropertyInSignature(@Nonnull
                                                           IRI iri,
                                                           boolean b)

Deprecated.

Specified by:

containsDataPropertyInSignature in interface OWLSignatureBooleanArgs

containsAnnotationPropertyInSignature

@Deprecated
public boolean containsAnnotationPropertyInSignature(@Nonnull
                                                                 IRI iri,
                                                                 boolean b)

Deprecated.

Specified by:

containsAnnotationPropertyInSignature in interface OWLSignatureBooleanArgs

containsDatatypeInSignature

@Deprecated
public boolean containsDatatypeInSignature(@Nonnull
                                                       IRI iri,
                                                       boolean b)

Deprecated.

Specified by:

containsDatatypeInSignature in interface OWLSignatureBooleanArgs

containsIndividualInSignature

@Deprecated
public boolean containsIndividualInSignature(@Nonnull
                                                         IRI iri,
                                                         boolean b)

Deprecated.

Specified by:

containsIndividualInSignature in interface OWLSignatureBooleanArgs

getEntitiesInSignature

@Deprecated
 @Nonnull
public Set<OWLEntity> getEntitiesInSignature(@Nonnull
                                                                   IRI iri,
                                                                   boolean b)

Deprecated.

Specified by:

getEntitiesInSignature in interface OWLSignatureBooleanArgs

containsReference

@Deprecated
public boolean containsReference(@Nonnull
                                             OWLEntity owlEntity,
                                             boolean b)

Deprecated.

Specified by:

containsReference in interface OWLSignatureBooleanArgs

getAxioms

@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      Class<T> aClass,
                                                      @Nonnull
                                                      OWLObject owlObject,
                                                      @Nonnull
                                                      Imports imports,
                                                      @Nonnull
                                                      Navigation navigation)

Specified by:

getAxioms in interface OWLAxiomIndex

filterAxioms

@Nonnull
public <T extends OWLAxiom> Collection<T> filterAxioms(@Nonnull
                                                                OWLAxiomSearchFilter owlAxiomSearchFilter,
                                                                @Nonnull
                                                                Object o,
                                                                @Nonnull
                                                                Imports imports)

Specified by:

filterAxioms in interface OWLAxiomIndex

contains

public boolean contains(@Nonnull
                        OWLAxiomSearchFilter owlAxiomSearchFilter,
                        @Nonnull
                        Object o,
                        @Nonnull
                        Imports imports)

Specified by:

contains in interface OWLAxiomIndex

getAxioms

@Nonnull
public <T extends OWLAxiom> Set<T> getAxioms(@Nonnull
                                                      Class<T> aClass,
                                                      @Nonnull
                                                      Class<? extends OWLObject> aClass1,
                                                      @Nonnull
                                                      OWLObject owlObject,
                                                      @Nonnull
                                                      Imports imports,
                                                      @Nonnull
                                                      Navigation navigation)

Specified by:

getAxioms in interface OWLAxiomIndex

getSubAnnotationPropertyOfAxioms

@Nonnull
public Set<OWLSubAnnotationPropertyOfAxiom> getSubAnnotationPropertyOfAxioms(@Nonnull
                                                                                      OWLAnnotationProperty owlAnnotationProperty)

Specified by:

getSubAnnotationPropertyOfAxioms in interface OWLAxiomIndex

getAnnotationPropertyDomainAxioms

@Nonnull
public Set<OWLAnnotationPropertyDomainAxiom> getAnnotationPropertyDomainAxioms(@Nonnull
                                                                                        OWLAnnotationProperty owlAnnotationProperty)

Specified by:

getAnnotationPropertyDomainAxioms in interface OWLAxiomIndex

getAnnotationPropertyRangeAxioms

@Nonnull
public Set<OWLAnnotationPropertyRangeAxiom> getAnnotationPropertyRangeAxioms(@Nonnull
                                                                                      OWLAnnotationProperty owlAnnotationProperty)

Specified by:

getAnnotationPropertyRangeAxioms in interface OWLAxiomIndex

getDeclarationAxioms

@Nonnull
public Set<OWLDeclarationAxiom> getDeclarationAxioms(@Nonnull
                                                              OWLEntity owlEntity)

Specified by:

getDeclarationAxioms in interface OWLAxiomIndex

getAnnotationAssertionAxioms

@Nonnull
public Set<OWLAnnotationAssertionAxiom> getAnnotationAssertionAxioms(@Nonnull
                                                                              OWLAnnotationSubject owlAnnotationSubject)

Specified by:

getAnnotationAssertionAxioms in interface OWLAxiomIndex

getSubClassAxiomsForSubClass

@Nonnull
public Set<OWLSubClassOfAxiom> getSubClassAxiomsForSubClass(@Nonnull
                                                                     OWLClass owlClass)

Specified by:

getSubClassAxiomsForSubClass in interface OWLAxiomIndex

getSubClassAxiomsForSuperClass

@Nonnull
public Set<OWLSubClassOfAxiom> getSubClassAxiomsForSuperClass(@Nonnull
                                                                       OWLClass owlClass)

Specified by:

getSubClassAxiomsForSuperClass in interface OWLAxiomIndex

getEquivalentClassesAxioms

@Nonnull
public Set<OWLEquivalentClassesAxiom> getEquivalentClassesAxioms(@Nonnull
                                                                          OWLClass owlClass)

Specified by:

getEquivalentClassesAxioms in interface OWLAxiomIndex

getDisjointClassesAxioms

@Nonnull
public Set<OWLDisjointClassesAxiom> getDisjointClassesAxioms(@Nonnull
                                                                      OWLClass owlClass)

Specified by:

getDisjointClassesAxioms in interface OWLAxiomIndex

getDisjointUnionAxioms

@Nonnull
public Set<OWLDisjointUnionAxiom> getDisjointUnionAxioms(@Nonnull
                                                                  OWLClass owlClass)

Specified by:

getDisjointUnionAxioms in interface OWLAxiomIndex

getHasKeyAxioms

@Nonnull
public Set<OWLHasKeyAxiom> getHasKeyAxioms(@Nonnull
                                                    OWLClass owlClass)

Specified by:

getHasKeyAxioms in interface OWLAxiomIndex

getObjectSubPropertyAxiomsForSubProperty

@Nonnull
public Set<OWLSubObjectPropertyOfAxiom> getObjectSubPropertyAxiomsForSubProperty(@Nonnull
                                                                                          OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getObjectSubPropertyAxiomsForSubProperty in interface OWLAxiomIndex

getObjectSubPropertyAxiomsForSuperProperty

@Nonnull
public Set<OWLSubObjectPropertyOfAxiom> getObjectSubPropertyAxiomsForSuperProperty(@Nonnull
                                                                                            OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getObjectSubPropertyAxiomsForSuperProperty in interface OWLAxiomIndex

getObjectPropertyDomainAxioms

@Nonnull
public Set<OWLObjectPropertyDomainAxiom> getObjectPropertyDomainAxioms(@Nonnull
                                                                                OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getObjectPropertyDomainAxioms in interface OWLAxiomIndex

getObjectPropertyRangeAxioms

@Nonnull
public Set<OWLObjectPropertyRangeAxiom> getObjectPropertyRangeAxioms(@Nonnull
                                                                              OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getObjectPropertyRangeAxioms in interface OWLAxiomIndex

getInverseObjectPropertyAxioms

@Nonnull
public Set<OWLInverseObjectPropertiesAxiom> getInverseObjectPropertyAxioms(@Nonnull
                                                                                    OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getInverseObjectPropertyAxioms in interface OWLAxiomIndex

getEquivalentObjectPropertiesAxioms

@Nonnull
public Set<OWLEquivalentObjectPropertiesAxiom> getEquivalentObjectPropertiesAxioms(@Nonnull
                                                                                            OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getEquivalentObjectPropertiesAxioms in interface OWLAxiomIndex

getDisjointObjectPropertiesAxioms

@Nonnull
public Set<OWLDisjointObjectPropertiesAxiom> getDisjointObjectPropertiesAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getDisjointObjectPropertiesAxioms in interface OWLAxiomIndex

getFunctionalObjectPropertyAxioms

@Nonnull
public Set<OWLFunctionalObjectPropertyAxiom> getFunctionalObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getFunctionalObjectPropertyAxioms in interface OWLAxiomIndex

getInverseFunctionalObjectPropertyAxioms

@Nonnull
public Set<OWLInverseFunctionalObjectPropertyAxiom> getInverseFunctionalObjectPropertyAxioms(@Nonnull
                                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getInverseFunctionalObjectPropertyAxioms in interface OWLAxiomIndex

getSymmetricObjectPropertyAxioms

@Nonnull
public Set<OWLSymmetricObjectPropertyAxiom> getSymmetricObjectPropertyAxioms(@Nonnull
                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getSymmetricObjectPropertyAxioms in interface OWLAxiomIndex

getAsymmetricObjectPropertyAxioms

@Nonnull
public Set<OWLAsymmetricObjectPropertyAxiom> getAsymmetricObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getAsymmetricObjectPropertyAxioms in interface OWLAxiomIndex

getReflexiveObjectPropertyAxioms

@Nonnull
public Set<OWLReflexiveObjectPropertyAxiom> getReflexiveObjectPropertyAxioms(@Nonnull
                                                                                      OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getReflexiveObjectPropertyAxioms in interface OWLAxiomIndex

getIrreflexiveObjectPropertyAxioms

@Nonnull
public Set<OWLIrreflexiveObjectPropertyAxiom> getIrreflexiveObjectPropertyAxioms(@Nonnull
                                                                                          OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getIrreflexiveObjectPropertyAxioms in interface OWLAxiomIndex

getTransitiveObjectPropertyAxioms

@Nonnull
public Set<OWLTransitiveObjectPropertyAxiom> getTransitiveObjectPropertyAxioms(@Nonnull
                                                                                        OWLObjectPropertyExpression owlObjectPropertyExpression)

Specified by:

getTransitiveObjectPropertyAxioms in interface OWLAxiomIndex

getDataSubPropertyAxiomsForSubProperty

@Nonnull
public Set<OWLSubDataPropertyOfAxiom> getDataSubPropertyAxiomsForSubProperty(@Nonnull
                                                                                      OWLDataProperty owlDataProperty)

Specified by:

getDataSubPropertyAxiomsForSubProperty in interface OWLAxiomIndex

getDataSubPropertyAxiomsForSuperProperty

@Nonnull
public Set<OWLSubDataPropertyOfAxiom> getDataSubPropertyAxiomsForSuperProperty(@Nonnull
                                                                                        OWLDataPropertyExpression owlDataPropertyExpression)

Specified by:

getDataSubPropertyAxiomsForSuperProperty in interface OWLAxiomIndex

getDataPropertyDomainAxioms

@Nonnull
public Set<OWLDataPropertyDomainAxiom> getDataPropertyDomainAxioms(@Nonnull
                                                                            OWLDataProperty owlDataProperty)

Specified by:

getDataPropertyDomainAxioms in interface OWLAxiomIndex

getDataPropertyRangeAxioms

@Nonnull
public Set<OWLDataPropertyRangeAxiom> getDataPropertyRangeAxioms(@Nonnull
                                                                          OWLDataProperty owlDataProperty)

Specified by:

getDataPropertyRangeAxioms in interface OWLAxiomIndex

getEquivalentDataPropertiesAxioms

@Nonnull
public Set<OWLEquivalentDataPropertiesAxiom> getEquivalentDataPropertiesAxioms(@Nonnull
                                                                                        OWLDataProperty owlDataProperty)

Specified by:

getEquivalentDataPropertiesAxioms in interface OWLAxiomIndex

getDisjointDataPropertiesAxioms

@Nonnull
public Set<OWLDisjointDataPropertiesAxiom> getDisjointDataPropertiesAxioms(@Nonnull
                                                                                    OWLDataProperty owlDataProperty)

Specified by:

getDisjointDataPropertiesAxioms in interface OWLAxiomIndex

getFunctionalDataPropertyAxioms

@Nonnull
public Set<OWLFunctionalDataPropertyAxiom> getFunctionalDataPropertyAxioms(@Nonnull
                                                                                    OWLDataPropertyExpression owlDataPropertyExpression)

Specified by:

getFunctionalDataPropertyAxioms in interface OWLAxiomIndex

getClassAssertionAxioms

@Nonnull
public Set<OWLClassAssertionAxiom> getClassAssertionAxioms(@Nonnull
                                                                    OWLIndividual owlIndividual)

Specified by:

getClassAssertionAxioms in interface OWLAxiomIndex

getClassAssertionAxioms

@Nonnull
public Set<OWLClassAssertionAxiom> getClassAssertionAxioms(@Nonnull
                                                                    OWLClassExpression owlClassExpression)

Specified by:

getClassAssertionAxioms in interface OWLAxiomIndex

getDataPropertyAssertionAxioms

@Nonnull
public Set<OWLDataPropertyAssertionAxiom> getDataPropertyAssertionAxioms(@Nonnull
                                                                                  OWLIndividual owlIndividual)

Specified by:

getDataPropertyAssertionAxioms in interface OWLAxiomIndex

getObjectPropertyAssertionAxioms

@Nonnull
public Set<OWLObjectPropertyAssertionAxiom> getObjectPropertyAssertionAxioms(@Nonnull
                                                                                      OWLIndividual owlIndividual)

Specified by:

getObjectPropertyAssertionAxioms in interface OWLAxiomIndex

getNegativeObjectPropertyAssertionAxioms

@Nonnull
public Set<OWLNegativeObjectPropertyAssertionAxiom> getNegativeObjectPropertyAssertionAxioms(@Nonnull
                                                                                                      OWLIndividual owlIndividual)

Specified by:

getNegativeObjectPropertyAssertionAxioms in interface OWLAxiomIndex

getNegativeDataPropertyAssertionAxioms

@Nonnull
public Set<OWLNegativeDataPropertyAssertionAxiom> getNegativeDataPropertyAssertionAxioms(@Nonnull
                                                                                                  OWLIndividual owlIndividual)

Specified by:

getNegativeDataPropertyAssertionAxioms in interface OWLAxiomIndex

getSameIndividualAxioms

@Nonnull
public Set<OWLSameIndividualAxiom> getSameIndividualAxioms(@Nonnull
                                                                    OWLIndividual owlIndividual)

Specified by:

getSameIndividualAxioms in interface OWLAxiomIndex

getDifferentIndividualAxioms

@Nonnull
public Set<OWLDifferentIndividualsAxiom> getDifferentIndividualAxioms(@Nonnull
                                                                               OWLIndividual owlIndividual)

Specified by:

getDifferentIndividualAxioms in interface OWLAxiomIndex

getDatatypeDefinitions

@Nonnull
public Set<OWLDatatypeDefinitionAxiom> getDatatypeDefinitions(@Nonnull
                                                                       OWLDatatype owlDatatype)

Specified by:

getDatatypeDefinitions in interface OWLAxiomIndex

applyChange

@Nonnull
public ChangeApplied applyChange(@Nonnull
                                          OWLOntologyChange owlOntologyChange)

Specified by:

applyChange in interface HasApplyChange

applyChanges

@Nonnull
public ChangeApplied applyChanges(@Nonnull
                                           List<? extends OWLOntologyChange> list)

Specified by:

applyChanges in interface HasApplyChanges

applyChangesAndGetDetails

public ChangeDetails applyChangesAndGetDetails(List<? extends OWLOntologyChange> list)

Specified by:

applyChangesAndGetDetails in interface HasApplyChanges

addAxiom

@Nonnull
public ChangeApplied addAxiom(@Nonnull
                                       OWLAxiom owlAxiom)

Specified by:

addAxiom in interface HasDirectAddAxiom

addAxioms

public ChangeApplied addAxioms(@Nonnull
                               Set<? extends OWLAxiom> set)

Specified by:

addAxioms in interface HasDirectAddAxioms