A B C D E F G H I L M N P R S T V W

A

AbstractErrorFunction - Interface in net.seninp.jmotif.direct

A template.

AbstractErrorFunction - Interface in net.seninp.jmotif.direct

A template.

addWord(String) - Method in class net.seninp.jmotif.text.WordBag

Add the word into the bag.

addWord(String, Integer) - Method in class net.seninp.jmotif.text.WordBag

Add the word into the dictionary.

addWord(String) - Method in class net.seninp.jmotif.text.WordBag

Add the word into the bag.

addWord(String, Integer) - Method in class net.seninp.jmotif.text.WordBag

Add the word into the dictionary.

alphabetSize - Variable in class net.seninp.jmotif.text.Params

alphabetSize - Variable in class net.seninp.jmotif.text.Params

at(double...) - Static method in class net.seninp.jmotif.direct.Point

Factory method for creating Point instances out of arrays of values.

at(double...) - Static method in class net.seninp.jmotif.direct.Point

Factory method for creating Point instances out of arrays of values.

at(Point, double) - Static method in class net.seninp.jmotif.direct.ValuePoint

Constructor.

at(Point, double) - Static method in class net.seninp.jmotif.direct.ValuePoint

Constructor.

at(Point, double, boolean) - Static method in class net.seninp.jmotif.direct.ValuePointColored

Constructor.

at(Point, double, boolean) - Static method in class net.seninp.jmotif.direct.ValuePointColored

Constructor.

augmentedTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

augmentedTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

B

bagsToTable(List<WordBag>) - Method in class net.seninp.jmotif.text.TextProcessor

bagsToTable(List<WordBag>) - Method in class net.seninp.jmotif.text.TextProcessor

C

centroidsToString(LinkedHashMap<String, HashMap<String, Double>>) - Static method in class net.seninp.jmotif.cluster.ClusterUtils

centroidsToString(LinkedHashMap<String, HashMap<String, Double>>) - Static method in class net.seninp.jmotif.cluster.ClusterUtils

classify(String, double[], HashMap<String, HashMap<String, Double>>, Params) - Method in class net.seninp.jmotif.text.TextProcessor

classify(String, WordBag, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

classify(WordBag, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

classify(String, double[], HashMap<String, HashMap<String, Double>>, Params) - Method in class net.seninp.jmotif.text.TextProcessor

classify(String, WordBag, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

classify(WordBag, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

clone() - Method in class net.seninp.jmotif.text.WordBag

clone() - Method in class net.seninp.jmotif.text.WordBag

Cluster - Class in net.seninp.jmotif.cluster

Implements a cluster node for SAX terms clustering.

Cluster - Class in net.seninp.jmotif.cluster

Implements a cluster node for SAX terms clustering.

Cluster() - Constructor for class net.seninp.jmotif.cluster.Cluster

Constructor.

Cluster(String) - Constructor for class net.seninp.jmotif.cluster.Cluster

Constructor.

Cluster() - Constructor for class net.seninp.jmotif.cluster.Cluster

Constructor.

Cluster(String) - Constructor for class net.seninp.jmotif.cluster.Cluster

Constructor.

cluster(HashMap<String, HashMap<String, Double>>, Integer, StartStrategy) - Static method in class net.seninp.jmotif.cluster.TextKMeans

This clusters a map data structure of pairs bagName wordBag which is used as tfidf throughout of JMotif.

cluster(HashMap<String, HashMap<String, Double>>, Integer, StartStrategy) - Static method in class net.seninp.jmotif.cluster.TextKMeans

This clusters a map data structure of pairs bagName wordBag which is used as tfidf throughout of JMotif.

ClusterUtils - Class in net.seninp.jmotif.cluster

ClusterUtils - Class in net.seninp.jmotif.cluster

ClusterUtils() - Constructor for class net.seninp.jmotif.cluster.ClusterUtils

ClusterUtils() - Constructor for class net.seninp.jmotif.cluster.ClusterUtils

compare(Map.Entry<String, Double>, Map.Entry<String, Double>) - Method in class net.seninp.jmotif.direct.TfIdfEntryComparator

compare(Map.Entry<String, Double>, Map.Entry<String, Double>) - Method in class net.seninp.jmotif.direct.TfIdfEntryComparator

compareTo(ValuePoint) - Method in class net.seninp.jmotif.direct.ValuePoint

compareTo(ValuePoint) - Method in class net.seninp.jmotif.direct.ValuePoint

compareTo(ValuePoint) - Method in class net.seninp.jmotif.direct.ValuePointColored

compareTo(ValuePoint) - Method in class net.seninp.jmotif.direct.ValuePointColored

compute(double, double) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunction

compute(double, double) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunction

compute(double, double) - Static method in class net.seninp.jmotif.direct.ShubertFunction

compute(double, double) - Static method in class net.seninp.jmotif.direct.ShubertFunction

computeCentroid(HashMap<String, HashMap<String, Double>>, List<String>) - Static method in class net.seninp.jmotif.cluster.TextKMeans

This computes centroid for a set of vectors.

computeCentroid(HashMap<String, HashMap<String, Double>>, List<String>) - Static method in class net.seninp.jmotif.cluster.TextKMeans

This computes centroid for a set of vectors.

computeTFIDF(Collection<WordBag>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes TF*IDF values.

computeTFIDF(Collection<WordBag>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes TF*IDF values.

contains(String) - Method in class net.seninp.jmotif.text.WordBag

Quick check if the word is in the text.

contains(String) - Method in class net.seninp.jmotif.text.WordBag

Quick check if the word is in the text.

cosineDistance(HashMap<String, Double>, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes a cosine similarity.

cosineDistance(HashMap<String, Double>, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes a cosine similarity.

CosineDistanceMatrix - Class in net.seninp.jmotif.text

Implements cosine distance matrix.

CosineDistanceMatrix - Class in net.seninp.jmotif.text

Implements cosine distance matrix.

CosineDistanceMatrix(HashMap<String, HashMap<String, Double>>) - Constructor for class net.seninp.jmotif.text.CosineDistanceMatrix

Builds a distance matrix.

CosineDistanceMatrix(HashMap<String, HashMap<String, Double>>) - Constructor for class net.seninp.jmotif.text.CosineDistanceMatrix

Builds a distance matrix.

cosineSimilarity(WordBag, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

cosineSimilarity(WordBag, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

cosineSimilarityInstrumented(WordBag, HashMap<String, Double>, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

cosineSimilarityInstrumented(WordBag, HashMap<String, Double>, HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

cvError - Variable in class net.seninp.jmotif.text.Params

cvError - Variable in class net.seninp.jmotif.text.Params

D

DELIMITER - Static variable in class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

DELIMITER - Static variable in class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

df(HashMap<String, WordBag>, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute document frequency, DF, metrics.

df(HashMap<String, WordBag>, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute document frequency, DF, metrics.

distanceBetween - Variable in class net.seninp.jmotif.cluster.Cluster

The distance between left and right sub-clusters.

distanceBetween - Variable in class net.seninp.jmotif.cluster.Cluster

The distance between left and right sub-clusters.

distanceBetween(String, String) - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

get the distance value between two keys.

distanceBetween(String, String) - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

get the distance value between two keys.

distanceTo(Cluster, HashMap<String, HashMap<String, Double>>, CosineDistanceMatrix, LinkageCriterion) - Method in class net.seninp.jmotif.cluster.Cluster

Compute the distance between words clusters.

distanceTo(Cluster, HashMap<String, HashMap<String, Double>>, CosineDistanceMatrix, LinkageCriterion) - Method in class net.seninp.jmotif.cluster.Cluster

Compute the distance between words clusters.

dotProduct(double[], double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the dot product of two vectors.

dotProduct(Double[], Double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the dot product of two vectors.

dotProduct(double[], double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the dot product of two vectors.

dotProduct(Double[], Double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the dot product of two vectors.

E

equals(Object) - Method in class net.seninp.jmotif.cluster.Cluster

equals(Object) - Method in class net.seninp.jmotif.cluster.Cluster

equals(Object) - Method in class net.seninp.jmotif.direct.Point

equals(Object) - Method in class net.seninp.jmotif.direct.Point

equals(Object) - Method in class net.seninp.jmotif.direct.ValuePoint

equals(Object) - Method in class net.seninp.jmotif.direct.ValuePoint

equals(Object) - Method in class net.seninp.jmotif.direct.ValuePointColored

equals(Object) - Method in class net.seninp.jmotif.direct.ValuePointColored

equals(Object) - Method in class net.seninp.jmotif.text.Params

equals(Object) - Method in class net.seninp.jmotif.text.Params

F

FurthestFirstStrategy - Class in net.seninp.jmotif.cluster

FurthestFirstStrategy - Class in net.seninp.jmotif.cluster

FurthestFirstStrategy() - Constructor for class net.seninp.jmotif.cluster.FurthestFirstStrategy

FurthestFirstStrategy() - Constructor for class net.seninp.jmotif.cluster.FurthestFirstStrategy

G

getAlphabetSize() - Method in class net.seninp.jmotif.text.Params

getAlphabetSize() - Method in class net.seninp.jmotif.text.Params

getAverageFrequency() - Method in class net.seninp.jmotif.text.WordBag

Get the maximal observed frequency.

getAverageFrequency() - Method in class net.seninp.jmotif.text.WordBag

Get the maximal observed frequency.

getBest() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getBest() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.cluster.FurthestFirstStrategy

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.cluster.FurthestFirstStrategy

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.cluster.RandomStartStrategy

Samples out of data desired number of entries to use as initial cluster centers.

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.cluster.RandomStartStrategy

Samples out of data desired number of entries to use as initial cluster centers.

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in interface net.seninp.jmotif.cluster.StartStrategy

Samples out of data desired number of entries to use as initial cluster centers.

getCentroids(Integer, HashMap<String, HashMap<String, Double>>) - Method in interface net.seninp.jmotif.cluster.StartStrategy

Samples out of data desired number of entries to use as initial cluster centers.

getCosineDistanceMatrix(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

getCosineDistanceMatrix(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

getCvError() - Method in class net.seninp.jmotif.text.Params

getCvError() - Method in class net.seninp.jmotif.text.Params

getDefault() - Static method in class net.seninp.jmotif.direct.Point

Constructor.

getDefault() - Static method in class net.seninp.jmotif.direct.Point

Constructor.

getDefault() - Static method in class net.seninp.jmotif.direct.ValuePoint

Constructor.

getDefault() - Static method in class net.seninp.jmotif.direct.ValuePoint

Constructor.

getDefault() - Static method in class net.seninp.jmotif.direct.ValuePointColored

Constructor.

getDefault() - Static method in class net.seninp.jmotif.direct.ValuePointColored

Constructor.

getDistances() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Get the distances as matrix.

getDistances() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Get the distances as matrix.

getIndex() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getIndex() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getInternalWords() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getInternalWords() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getKey() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getKey() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getLabel() - Method in class net.seninp.jmotif.text.WordBag

Get the wordbag id or name.

getLabel() - Method in class net.seninp.jmotif.text.WordBag

Get the wordbag id or name.

getMaxFrequency() - Method in class net.seninp.jmotif.text.WordBag

Get the maximal observed frequency.

getMaxFrequency() - Method in class net.seninp.jmotif.text.WordBag

Get the maximal observed frequency.

getNrStartegy() - Method in class net.seninp.jmotif.text.Params

getNrStartegy() - Method in class net.seninp.jmotif.text.Params

getnThreshold() - Method in class net.seninp.jmotif.text.Params

getnThreshold() - Method in class net.seninp.jmotif.text.Params

getPaaSize() - Method in class net.seninp.jmotif.text.Params

getPaaSize() - Method in class net.seninp.jmotif.text.Params

getPoint() - Method in class net.seninp.jmotif.direct.ValuePoint

Getter.

getPoint() - Method in class net.seninp.jmotif.direct.ValuePoint

Getter.

getPoint() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getPoint() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getRows() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Get all the row names - i.e.

getRows() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Get all the row names - i.e.

getTotalWordCount() - Method in class net.seninp.jmotif.text.WordBag

Integral of all frequency values.

getTotalWordCount() - Method in class net.seninp.jmotif.text.WordBag

Integral of all frequency values.

getValue() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getValue() - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

getValue() - Method in class net.seninp.jmotif.direct.ValuePoint

Getter.

getValue() - Method in class net.seninp.jmotif.direct.ValuePoint

Getter.

getValue() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getValue() - Method in class net.seninp.jmotif.direct.ValuePointColored

Getter.

getWindowSize() - Method in class net.seninp.jmotif.text.Params

getWindowSize() - Method in class net.seninp.jmotif.text.Params

getWordFrequency(String) - Method in class net.seninp.jmotif.text.WordBag

Get the word occurrence frequency, if word is not in returns 0.

getWordFrequency(String) - Method in class net.seninp.jmotif.text.WordBag

Get the word occurrence frequency, if word is not in returns 0.

getWords() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getWords() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getWordsAsDoubles() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getWordsAsDoubles() - Method in class net.seninp.jmotif.text.WordBag

Get the words collection along with frequencies.

getWordSet() - Method in class net.seninp.jmotif.text.WordBag

Get the words set.

getWordSet() - Method in class net.seninp.jmotif.text.WordBag

Get the words set.

GoldsteinPriceFunction - Class in net.seninp.jmotif.direct

A test function.

GoldsteinPriceFunction - Class in net.seninp.jmotif.direct

A test function.

GoldsteinPriceFunction() - Constructor for class net.seninp.jmotif.direct.GoldsteinPriceFunction

GoldsteinPriceFunction() - Constructor for class net.seninp.jmotif.direct.GoldsteinPriceFunction

GoldsteinPriceFunctionSampler - Class in net.seninp.jmotif.direct

A test function.

GoldsteinPriceFunctionSampler - Class in net.seninp.jmotif.direct

A test function.

GoldsteinPriceFunctionSampler() - Constructor for class net.seninp.jmotif.direct.GoldsteinPriceFunctionSampler

GoldsteinPriceFunctionSampler() - Constructor for class net.seninp.jmotif.direct.GoldsteinPriceFunctionSampler

H

hashCode() - Method in class net.seninp.jmotif.cluster.Cluster

hashCode() - Method in class net.seninp.jmotif.cluster.Cluster

hashCode() - Method in class net.seninp.jmotif.direct.Point

hashCode() - Method in class net.seninp.jmotif.direct.Point

hashCode() - Method in class net.seninp.jmotif.direct.ValuePoint

hashCode() - Method in class net.seninp.jmotif.direct.ValuePoint

hashCode() - Method in class net.seninp.jmotif.direct.ValuePointColored

hashCode() - Method in class net.seninp.jmotif.direct.ValuePointColored

hashCode() - Method in class net.seninp.jmotif.text.Params

hashCode() - Method in class net.seninp.jmotif.text.Params

HC - Class in net.seninp.jmotif.cluster

Hierarchical clustering factory.

HC - Class in net.seninp.jmotif.cluster

Hierarchical clustering factory.

HC() - Constructor for class net.seninp.jmotif.cluster.HC

HC() - Constructor for class net.seninp.jmotif.cluster.HC

Hc(HashMap<String, HashMap<String, Double>>, LinkageCriterion) - Static method in class net.seninp.jmotif.cluster.HC

Implements hierarchical clustering for word bags.

Hc(HashMap<String, HashMap<String, Double>>, LinkageCriterion) - Static method in class net.seninp.jmotif.cluster.HC

Implements hierarchical clustering for word bags.

HOLD_OUT_NUM - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

HOLD_OUT_NUM - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

I

idf(HashMap<String, WordBag>, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute idf (inverse document frequency) metrics.

idf(HashMap<String, WordBag>, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute idf (inverse document frequency) metrics.

isTerminal() - Method in class net.seninp.jmotif.cluster.Cluster

Returns true if left and right sub-nodes of this node are NULLs.

isTerminal() - Method in class net.seninp.jmotif.cluster.Cluster

Returns true if left and right sub-nodes of this node are NULLs.

ITERATIONS_BREAK_THRESHOLD - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

ITERATIONS_BREAK_THRESHOLD - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

ITERATIONS_NUM - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

ITERATIONS_NUM - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

L

labeledSeries2WordBags(Map<String, List<double[]>>, Params) - Method in class net.seninp.jmotif.text.TextProcessor

labeledSeries2WordBags(Map<String, List<double[]>>, Params) - Method in class net.seninp.jmotif.text.TextProcessor

left - Variable in class net.seninp.jmotif.cluster.Cluster

The left sub-cluster.

left - Variable in class net.seninp.jmotif.cluster.Cluster

The left sub-cluster.

level - Variable in class net.seninp.jmotif.cluster.Cluster

The level from the root.

level - Variable in class net.seninp.jmotif.cluster.Cluster

The level from the root.

LinkageCriterion - Enum in net.seninp.jmotif.cluster

Common clustering dictionary.

LinkageCriterion - Enum in net.seninp.jmotif.cluster

Common clustering dictionary.

logAveTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

logAveTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

logTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

logTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

LOOCVStackEntry - Class in net.seninp.jmotif.direct

The stack entry data structure used in optimized LOOCV process.

LOOCVStackEntry - Class in net.seninp.jmotif.direct

The stack entry data structure used in optimized LOOCV process.

LOOCVStackEntry(String, double[], int) - Constructor for class net.seninp.jmotif.direct.LOOCVStackEntry

LOOCVStackEntry(String, double[], int) - Constructor for class net.seninp.jmotif.direct.LOOCVStackEntry

M

magnitude(double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the magnitude of the vector.

magnitude(Double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the magnitude of the vector.

magnitude(double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the magnitude of the vector.

magnitude(Double[]) - Method in class net.seninp.jmotif.text.TextProcessor

Compute the magnitude of the vector.

main(String[]) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunctionSampler

main(String[]) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunctionSampler

main(String[]) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

main(String[]) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

main(String[]) - Static method in class net.seninp.jmotif.direct.SAXVSMPatternExplorer

The main runnable.

main(String[]) - Static method in class net.seninp.jmotif.direct.SAXVSMPatternExplorer

The main runnable.

main(String[]) - Static method in class net.seninp.jmotif.SAXVSMClassifier

main(String[]) - Static method in class net.seninp.jmotif.SAXVSMClassifier

merge(Cluster, Cluster, Double) - Method in class net.seninp.jmotif.cluster.Cluster

Merging together clusters.

merge(Cluster, Cluster, Double) - Method in class net.seninp.jmotif.cluster.Cluster

Merging together clusters.

mergeWith(WordBag) - Method in class net.seninp.jmotif.text.WordBag

Implements merge operation for this bag with some other bag.

mergeWith(WordBag) - Method in class net.seninp.jmotif.text.WordBag

Implements merge operation for this bag with some other bag.

N

net.seninp.jmotif - package net.seninp.jmotif

Implements SAX-VSM.

net.seninp.jmotif.cluster - package net.seninp.jmotif.cluster

Implements clustering.

net.seninp.jmotif.direct - package net.seninp.jmotif.direct

Implements the DIRECT-based sampler.

net.seninp.jmotif.text - package net.seninp.jmotif.text

Provides implementations of text mining algorithms, datastructures and metrics.

normalizedTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

normalizedTF(WordBag, String) - Method in class net.seninp.jmotif.text.TextProcessor

Compute TF (term frequency) metrics.

normalizeToUnitVector(HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

Normalize the vector to the norm of 1.

normalizeToUnitVector(HashMap<String, Double>) - Method in class net.seninp.jmotif.text.TextProcessor

Normalize the vector to the norm of 1.

normalizeToUnitVectors(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes a cosine normalization of TFIDF statistics.

normalizeToUnitVectors(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

Computes a cosine normalization of TFIDF statistics.

nrStartegy - Variable in class net.seninp.jmotif.text.Params

nrStartegy - Variable in class net.seninp.jmotif.text.Params

nThreshold - Variable in class net.seninp.jmotif.text.Params

nThreshold - Variable in class net.seninp.jmotif.text.Params

P

paaSize - Variable in class net.seninp.jmotif.text.Params

paaSize - Variable in class net.seninp.jmotif.text.Params

parameters - Variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

parameters - Variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

parameters - Variable in class net.seninp.jmotif.SAXVSMClassifierParams

parameters - Variable in class net.seninp.jmotif.SAXVSMClassifierParams

Params - Class in net.seninp.jmotif.text

Parameters for sax-vsm transform.

Params - Class in net.seninp.jmotif.text

Parameters for sax-vsm transform.

Params(int, int, int, double, NumerosityReductionStrategy, double) - Constructor for class net.seninp.jmotif.text.Params

Params(int, int, int, double, NumerosityReductionStrategy) - Constructor for class net.seninp.jmotif.text.Params

Params(int, int, int, double, NumerosityReductionStrategy, double) - Constructor for class net.seninp.jmotif.text.Params

Params(int, int, int, double, NumerosityReductionStrategy) - Constructor for class net.seninp.jmotif.text.Params

Point - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

Point - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

R

random(int) - Static method in class net.seninp.jmotif.direct.Point

random(int, double, double) - Static method in class net.seninp.jmotif.direct.Point

random(int) - Static method in class net.seninp.jmotif.direct.Point

random(int, double, double) - Static method in class net.seninp.jmotif.direct.Point

RandomStartStrategy - Class in net.seninp.jmotif.cluster

Implements a random strategy

RandomStartStrategy - Class in net.seninp.jmotif.cluster

Implements a random strategy

RandomStartStrategy() - Constructor for class net.seninp.jmotif.cluster.RandomStartStrategy

RandomStartStrategy() - Constructor for class net.seninp.jmotif.cluster.RandomStartStrategy

right - Variable in class net.seninp.jmotif.cluster.Cluster

The right sub-cluster.

right - Variable in class net.seninp.jmotif.cluster.Cluster

The right sub-cluster.

S

SAX_ALPHABET_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_ALPHABET_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_ALPHABET_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_ALPHABET_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_ALPHABET_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_ALPHABET_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_NORM_THRESHOLD - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_NORM_THRESHOLD - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_NORM_THRESHOLD - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_NORM_THRESHOLD - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_NR_STRATEGY - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_NR_STRATEGY - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_PAA_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_PAA_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_PAA_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_PAA_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_PAA_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_PAA_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_WINDOW_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_WINDOW_SIZE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

SAX_WINDOW_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_WINDOW_SIZE_MAX - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_WINDOW_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAX_WINDOW_SIZE_MIN - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAXVSMClassifier - Class in net.seninp.jmotif

This implements a classifier.

SAXVSMClassifier - Class in net.seninp.jmotif

This implements a classifier.

SAXVSMClassifier() - Constructor for class net.seninp.jmotif.SAXVSMClassifier

SAXVSMClassifier() - Constructor for class net.seninp.jmotif.SAXVSMClassifier

SAXVSMClassifierParams - Class in net.seninp.jmotif

This implements a classifier.

SAXVSMClassifierParams - Class in net.seninp.jmotif

This implements a classifier.

SAXVSMClassifierParams() - Constructor for class net.seninp.jmotif.SAXVSMClassifierParams

SAXVSMClassifierParams() - Constructor for class net.seninp.jmotif.SAXVSMClassifierParams

SAXVSMCVErrorFunction - Class in net.seninp.jmotif.direct

This computes the cross-validation classification error given the set of parameters.

SAXVSMCVErrorFunction - Class in net.seninp.jmotif.direct

This computes the cross-validation classification error given the set of parameters.

SAXVSMCVErrorFunction(Map<String, List<double[]>>, int, double, NumerosityReductionStrategy) - Constructor for class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

Constructor.

SAXVSMCVErrorFunction(Map<String, List<double[]>>, int, double, NumerosityReductionStrategy) - Constructor for class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

Constructor.

SAXVSMDirectSampler - Class in net.seninp.jmotif.direct

Implements a cross-validation DIRECT-based procedure for SAX-VSM parameters optimization.

SAXVSMDirectSampler - Class in net.seninp.jmotif.direct

Implements a cross-validation DIRECT-based procedure for SAX-VSM parameters optimization.

SAXVSMDirectSampler() - Constructor for class net.seninp.jmotif.direct.SAXVSMDirectSampler

SAXVSMDirectSampler() - Constructor for class net.seninp.jmotif.direct.SAXVSMDirectSampler

SAXVSMDirectSamplerParams - Class in net.seninp.jmotif.direct

This implements a classifier.

SAXVSMDirectSamplerParams - Class in net.seninp.jmotif.direct

This implements a classifier.

SAXVSMDirectSamplerParams() - Constructor for class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAXVSMDirectSamplerParams() - Constructor for class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

SAXVSMPatternExplorer - Class in net.seninp.jmotif.direct

Hunts for best scoring patterns for the class and prints them out.

SAXVSMPatternExplorer - Class in net.seninp.jmotif.direct

Hunts for best scoring patterns for the class and prints them out.

SAXVSMPatternExplorer() - Constructor for class net.seninp.jmotif.direct.SAXVSMPatternExplorer

SAXVSMPatternExplorer() - Constructor for class net.seninp.jmotif.direct.SAXVSMPatternExplorer

seriesToWordBag(String, double[], Params) - Method in class net.seninp.jmotif.text.TextProcessor

Converts time series to a word bag.

seriesToWordBag(String, double[], Params) - Method in class net.seninp.jmotif.text.TextProcessor

Converts time series to a word bag.

setAlphabetSize(int) - Method in class net.seninp.jmotif.text.Params

setAlphabetSize(int) - Method in class net.seninp.jmotif.text.Params

setBest(boolean) - Method in class net.seninp.jmotif.direct.ValuePointColored

setBest(boolean) - Method in class net.seninp.jmotif.direct.ValuePointColored

setCvError(double) - Method in class net.seninp.jmotif.text.Params

setCvError(double) - Method in class net.seninp.jmotif.text.Params

setIndex(int) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setIndex(int) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setKey(String) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setKey(String) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setLabel(String) - Method in class net.seninp.jmotif.text.WordBag

Set the new label on this bag.

setLabel(String) - Method in class net.seninp.jmotif.text.WordBag

Set the new label on this bag.

setNrStartegy(NumerosityReductionStrategy) - Method in class net.seninp.jmotif.text.Params

setNrStartegy(NumerosityReductionStrategy) - Method in class net.seninp.jmotif.text.Params

setnThreshold(double) - Method in class net.seninp.jmotif.text.Params

setnThreshold(double) - Method in class net.seninp.jmotif.text.Params

setPaaSize(int) - Method in class net.seninp.jmotif.text.Params

setPaaSize(int) - Method in class net.seninp.jmotif.text.Params

setValue(double[]) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setValue(double[]) - Method in class net.seninp.jmotif.direct.LOOCVStackEntry

setWindowSize(int) - Method in class net.seninp.jmotif.text.Params

setWindowSize(int) - Method in class net.seninp.jmotif.text.Params

ShubertFunction - Class in net.seninp.jmotif.direct

A test function.

ShubertFunction - Class in net.seninp.jmotif.direct

A test function.

ShubertFunction() - Constructor for class net.seninp.jmotif.direct.ShubertFunction

ShubertFunction() - Constructor for class net.seninp.jmotif.direct.ShubertFunction

StartStrategy - Interface in net.seninp.jmotif.cluster

Template for initial k-means centroids strategy.

StartStrategy - Interface in net.seninp.jmotif.cluster

Template for initial k-means centroids strategy.

T

TEST_FILE - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

TEST_FILE - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

TEST_FILE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

TEST_FILE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

TextKMeans - Class in net.seninp.jmotif.cluster

TextKMeans - Class in net.seninp.jmotif.cluster

TextKMeans() - Constructor for class net.seninp.jmotif.cluster.TextKMeans

TextKMeans() - Constructor for class net.seninp.jmotif.cluster.TextKMeans

TextProcessor - Class in net.seninp.jmotif.text

Implements text statistics and mining utilities.

TextProcessor - Class in net.seninp.jmotif.text

Implements text statistics and mining utilities.

TextProcessor() - Constructor for class net.seninp.jmotif.text.TextProcessor

Constructor.

TextProcessor() - Constructor for class net.seninp.jmotif.text.TextProcessor

Constructor.

TfIdfEntryComparator - Class in net.seninp.jmotif.direct

TfIdfEntryComparator - Class in net.seninp.jmotif.direct

TfIdfEntryComparator() - Constructor for class net.seninp.jmotif.direct.TfIdfEntryComparator

TfIdfEntryComparator() - Constructor for class net.seninp.jmotif.direct.TfIdfEntryComparator

tfidfToTable(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

tfidfToTable(HashMap<String, HashMap<String, Double>>) - Method in class net.seninp.jmotif.text.TextProcessor

toArray() - Method in class net.seninp.jmotif.direct.Point

Returns the internal representation of this Point object.

toArray() - Method in class net.seninp.jmotif.direct.Point

Returns the internal representation of this Point object.

toColumn() - Method in class net.seninp.jmotif.text.WordBag

toColumn() - Method in class net.seninp.jmotif.text.WordBag

toIntArray() - Method in class net.seninp.jmotif.direct.Point

toIntArray() - Method in class net.seninp.jmotif.direct.Point

toLogStr(Params, double, double) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

toLogStr(Params, double, double) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

toLogStr(Params, double, double) - Static method in class net.seninp.jmotif.SAXVSMClassifier

toLogStr(Params, double, double) - Static method in class net.seninp.jmotif.SAXVSMClassifier

toLogString() - Method in class net.seninp.jmotif.direct.Point

toLogString() - Method in class net.seninp.jmotif.direct.Point

toNewick() - Method in class net.seninp.jmotif.cluster.Cluster

Returns the NEWICK format representation of this node cluster.

toNewick() - Method in class net.seninp.jmotif.cluster.Cluster

Returns the NEWICK format representation of this node cluster.

toParserString(Params, double, double) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

toParserString(Params, double, double) - Static method in class net.seninp.jmotif.direct.SAXVSMDirectSampler

toString() - Method in class net.seninp.jmotif.cluster.Cluster

toString() - Method in class net.seninp.jmotif.cluster.Cluster

toString() - Method in class net.seninp.jmotif.direct.Point

toString() - Method in class net.seninp.jmotif.direct.Point

toString() - Method in class net.seninp.jmotif.direct.ValuePoint

toString() - Method in class net.seninp.jmotif.direct.ValuePoint

toString() - Method in class net.seninp.jmotif.direct.ValuePointColored

toString() - Method in class net.seninp.jmotif.direct.ValuePointColored

toString() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Prints matrix.

toString() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

Prints matrix.

toString() - Method in class net.seninp.jmotif.text.Params

toString() - Method in class net.seninp.jmotif.text.Params

toString() - Method in class net.seninp.jmotif.text.WordBag

toString() - Method in class net.seninp.jmotif.text.WordBag

TRAIN_FILE - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

TRAIN_FILE - Static variable in class net.seninp.jmotif.direct.SAXVSMDirectSamplerParams

TRAIN_FILE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

TRAIN_FILE - Static variable in class net.seninp.jmotif.SAXVSMClassifierParams

transformForHC() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

This will subtract all distance values from 1 - so distance becomes inversed - good for clustering.

transformForHC() - Method in class net.seninp.jmotif.text.CosineDistanceMatrix

This will subtract all distance values from 1 - so distance becomes inversed - good for clustering.

V

valueAt(Point) - Method in interface net.seninp.jmotif.direct.AbstractErrorFunction

valueAt(Point) - Method in interface net.seninp.jmotif.direct.AbstractErrorFunction

valueAt(Point) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunction

valueAt(Point) - Static method in class net.seninp.jmotif.direct.GoldsteinPriceFunction

valueAt(Point) - Method in class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

Computes the value at point.

valueAt(Point) - Method in class net.seninp.jmotif.direct.SAXVSMCVErrorFunction

Computes the value at point.

valueAt(Point) - Static method in class net.seninp.jmotif.direct.ShubertFunction

valueAt(Point) - Static method in class net.seninp.jmotif.direct.ShubertFunction

valueOf(String) - Static method in enum net.seninp.jmotif.cluster.LinkageCriterion

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum net.seninp.jmotif.cluster.LinkageCriterion

Returns the enum constant of this type with the specified name.

ValuePoint - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

ValuePoint - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

ValuePointColored - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

ValuePointColored - Class in net.seninp.jmotif.direct

The direct code was taken from JCOOL (Java COntinuous Optimization Library), and altered for SAX-VSM needs.

values() - Static method in enum net.seninp.jmotif.cluster.LinkageCriterion

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum net.seninp.jmotif.cluster.LinkageCriterion

Returns an array containing the constants of this enum type, in the order they are declared.

W

windowSize - Variable in class net.seninp.jmotif.text.Params

windowSize - Variable in class net.seninp.jmotif.text.Params

WordBag - Class in net.seninp.jmotif.text

Implements a word bag.

WordBag - Class in net.seninp.jmotif.text

Implements a word bag.

WordBag(String) - Constructor for class net.seninp.jmotif.text.WordBag

Constructor.

WordBag(String, HashMap<String, Integer>) - Constructor for class net.seninp.jmotif.text.WordBag

Constructor

WordBag(String) - Constructor for class net.seninp.jmotif.text.WordBag

Constructor.

WordBag(String, HashMap<String, Integer>) - Constructor for class net.seninp.jmotif.text.WordBag

Constructor

wordBagToTable(WordBag) - Method in class net.seninp.jmotif.text.TextProcessor

wordBagToTable(WordBag) - Method in class net.seninp.jmotif.text.TextProcessor

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