Hierarchy For Package org.seqdoop.hadoop_bam.util

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • org.seqdoop.hadoop_bam.util.BGZFBlockIndex
  • org.seqdoop.hadoop_bam.util.BGZFBlockIndexer
  • org.seqdoop.hadoop_bam.util.BGZFSplitGuesser
  • org.seqdoop.hadoop_bam.util.ConfHelper
  • org.apache.hadoop.io.compress.DefaultCodec (implements org.apache.hadoop.io.compress.CompressionCodec, org.apache.hadoop.conf.Configurable)
    • org.apache.hadoop.io.compress.GzipCodec
      • org.seqdoop.hadoop_bam.util.BGZFCodec (implements org.apache.hadoop.io.compress.SplittableCompressionCodec)
      • org.seqdoop.hadoop_bam.util.BGZFEnhancedGzipCodec (implements org.apache.hadoop.io.compress.SplittableCompressionCodec)
  • org.seqdoop.hadoop_bam.util.GetSortedBAMHeader
  • org.apache.hadoop.mapreduce.InputFormat<K,V>
    • org.apache.hadoop.mapreduce.lib.input.FileInputFormat<K,V>
      • org.seqdoop.hadoop_bam.util.BGZFSplitFileInputFormat<K,V>
  • java.io.InputStream (implements java.io.Closeable)
    • org.seqdoop.hadoop_bam.util.DataInputWrapper
    • htsjdk.samtools.seekablestream.SeekableStream
      • org.seqdoop.hadoop_bam.util.SeekableArrayStream
      • org.seqdoop.hadoop_bam.util.WrapSeekable<S>
  • org.seqdoop.hadoop_bam.util.MurmurHash3
  • org.seqdoop.hadoop_bam.util.NIOFileUtil
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • org.seqdoop.hadoop_bam.util.DataOutputWrapper
  • org.seqdoop.hadoop_bam.util.Pair<A,B>
  • org.seqdoop.hadoop_bam.util.SAMFileMerger
  • org.seqdoop.hadoop_bam.util.SAMHeaderReader
  • org.seqdoop.hadoop_bam.util.SAMOutputPreparer
  • org.seqdoop.hadoop_bam.util.Timer
  • org.seqdoop.hadoop_bam.util.VCFFileMerger
  • org.seqdoop.hadoop_bam.util.VCFHeaderReader