org.seqdoop.hadoop_bam.util

Class SeekableArrayStream

java.lang.Object

java.io.InputStream

htsjdk.samtools.seekablestream.SeekableStream

org.seqdoop.hadoop_bam.util.SeekableArrayStream

All Implemented Interfaces:

Closeable, AutoCloseable

Deprecated.

Use ByteArraySeekableStream. This class will be removed in the next major version release (8.0).

@Deprecated
public class SeekableArrayStream
extends htsjdk.samtools.seekablestream.SeekableStream

Constructor Summary

Constructors

Constructor and Description
SeekableArrayStream(byte[] a) Deprecated.

Method Summary

Modifier and Type	Method and Description
void	close() Deprecated.
boolean	eof() Deprecated.
String	getSource() Deprecated.
long	length() Deprecated.
long	position() Deprecated.
int	read() Deprecated.
int	read(byte[] b, int off, int len) Deprecated.
void	seek(long lp) Deprecated.

Methods inherited from class htsjdk.samtools.seekablestream.SeekableStream

readFully

Methods inherited from class java.io.InputStream

available, mark, markSupported, read, reset, skip

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SeekableArrayStream

public SeekableArrayStream(byte[] a)

Deprecated.

Method Detail

close

public void close()

Deprecated.

Specified by:

close in interface Closeable

Specified by:

close in interface AutoCloseable

Specified by:

close in class htsjdk.samtools.seekablestream.SeekableStream

length

public long length()

Deprecated.

Specified by:

length in class htsjdk.samtools.seekablestream.SeekableStream

position

public long position()

Deprecated.

Specified by:

position in class htsjdk.samtools.seekablestream.SeekableStream

eof

public boolean eof()

Deprecated.

Specified by:

eof in class htsjdk.samtools.seekablestream.SeekableStream

seek

public void seek(long lp)
          throws IOException

Deprecated.

Specified by:

seek in class htsjdk.samtools.seekablestream.SeekableStream

Throws:

IOException

read

public int read(byte[] b,
                int off,
                int len)

Deprecated.

Specified by:

read in class htsjdk.samtools.seekablestream.SeekableStream

read

public int read()

Deprecated.

Specified by:

read in class InputStream

getSource

public String getSource()

Deprecated.

Specified by:

getSource in class htsjdk.samtools.seekablestream.SeekableStream