org.seqdoop.hadoop_bam
Interfaces
LazyParsingGenotypesContext.HeaderDataCache
Classes
AnySAMInputFormat
AnySAMOutputFormat
BAMInputFormat
BAMOutputFormat
BAMRecordReader
BAMRecordWriter
BAMSplitGuesser
BCFRecordReader
BCFRecordWriter
BCFSplitGuesser
CRAMInputFormat
CRAMOutputFormat
CRAMRecordReader
CRAMRecordWriter
FastaInputFormat
FastaInputFormat.FastaRecordReader
FastqInputFormat
FastqInputFormat.FastqRecordReader
FastqOutputFormat
FastqOutputFormat.FastqRecordWriter
FileVirtualSplit
FormatConstants
KeyIgnoringAnySAMOutputFormat
KeyIgnoringBAMOutputFormat
KeyIgnoringBAMRecordWriter
KeyIgnoringBCFRecordWriter
KeyIgnoringCRAMOutputFormat
KeyIgnoringCRAMRecordWriter
KeyIgnoringSAMRecordWriter
KeyIgnoringVCFOutputFormat
KeyIgnoringVCFRecordWriter
LazyBAMRecordFactory
LazyBCFGenotypesContext
LazyBCFGenotypesContext.HeaderDataCache
LazyBCFGenotypesContext.Parser
LazyParsingGenotypesContext
LazyParsingGenotypesContext.Parser
LazyVCFGenotypesContext
LazyVCFGenotypesContext.HeaderDataCache
LazyVCFGenotypesContext.Parser
LineReader
QseqInputFormat
QseqInputFormat.QseqRecordReader
QseqOutputFormat
QseqOutputFormat.QseqRecordWriter
ReferenceFragment
SAMInputFormat
SAMRecordReader
SAMRecordWritable
SAMRecordWriter
SequencedFragment
SplittingBAMIndex
SplittingBAMIndexer
VariantContextCodec
VariantContextWithHeader
VariantContextWritable
VCFInputFormat
VCFOutputFormat
VCFRecordReader
VCFRecordWriter
Enums
FormatConstants.BaseQualityEncoding
SAMFormat
VCFFormat
Exceptions
FormatException