Uses of Class
org.seqdoop.hadoop_bam.VCFFormat

Packages that use VCFFormat

Package	Description
org.seqdoop.hadoop_bam

Uses of VCFFormat in org.seqdoop.hadoop_bam

Fields in org.seqdoop.hadoop_bam declared as VCFFormat

Modifier and Type	Field and Description
protected VCFFormat	VCFOutputFormat.format

Methods in org.seqdoop.hadoop_bam that return VCFFormat

Modifier and Type	Method and Description
VCFFormat	VCFInputFormat.getFormat(org.apache.hadoop.fs.Path path) Returns the VCFFormat corresponding to the given path.
static VCFFormat	VCFFormat.inferFromData(InputStream in) Infers the VCF format by looking at the first few bytes of the input.
static VCFFormat	VCFFormat.inferFromFilePath(org.apache.hadoop.fs.Path path) Infers the VCF format by looking at the filename of the given path.
static VCFFormat	VCFFormat.inferFromFilePath(String name) Infers the VCF format by looking at the extension of the given file name.
static VCFFormat	VCFFormat.valueOf(String name) Returns the enum constant of this type with the specified name.
static VCFFormat[]	VCFFormat.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in org.seqdoop.hadoop_bam with parameters of type VCFFormat

Constructor and Description
KeyIgnoringVCFOutputFormat(VCFFormat fmt)
VCFOutputFormat(VCFFormat fmt) Creates a new output format for the given VCF format.

Constructor parameters in org.seqdoop.hadoop_bam with type arguments of type VCFFormat

Constructor and Description
VCFInputFormat(Map<org.apache.hadoop.fs.Path,VCFFormat> formatMap) Creates a new input format, trusting the given Map to define the file-to-format associations.