Uses of Class
org.seqdoop.hadoop_bam.ReferenceFragment

Packages that use ReferenceFragment

Package	Description
org.seqdoop.hadoop_bam

Uses of ReferenceFragment in org.seqdoop.hadoop_bam

Methods in org.seqdoop.hadoop_bam that return ReferenceFragment

Modifier and Type	Method and Description
ReferenceFragment	FastaInputFormat.FastaRecordReader.createValue() Create an object of the appropriate type to be used as a value.
ReferenceFragment	FastaInputFormat.FastaRecordReader.getCurrentValue() Added to use mapreduce API.

Methods in org.seqdoop.hadoop_bam that return types with arguments of type ReferenceFragment

Modifier and Type	Method and Description
org.apache.hadoop.mapreduce.RecordReader<org.apache.hadoop.io.Text,ReferenceFragment>	FastaInputFormat.createRecordReader(org.apache.hadoop.mapreduce.InputSplit genericSplit, org.apache.hadoop.mapreduce.TaskAttemptContext context)

Methods in org.seqdoop.hadoop_bam with parameters of type ReferenceFragment

Modifier and Type	Method and Description
boolean	FastaInputFormat.FastaRecordReader.next(org.apache.hadoop.io.Text key, ReferenceFragment value) Reads the next key/value pair from the input for processing.