org.seqdoop.hadoop_bam

Class CRAMOutputFormat<K>

java.lang.Object

org.apache.hadoop.mapreduce.OutputFormat<K,V>

org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<K,SAMRecordWritable>

org.seqdoop.hadoop_bam.CRAMOutputFormat<K>

Direct Known Subclasses:

KeyIgnoringCRAMOutputFormat

public abstract class CRAMOutputFormat<K>
extends org.apache.hadoop.mapreduce.lib.output.FileOutputFormat<K,SAMRecordWritable>

Currently this only locks down the value type of the OutputFormat: contains no functionality.

Nested Class Summary

Nested classes/interfaces inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

org.apache.hadoop.mapreduce.lib.output.FileOutputFormat.Counter

Field Summary

Fields inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

BASE_OUTPUT_NAME, COMPRESS, COMPRESS_CODEC, COMPRESS_TYPE, OUTDIR, PART

Constructor Summary

Constructors

Constructor and Description
CRAMOutputFormat()

Method Summary

Methods inherited from class org.apache.hadoop.mapreduce.lib.output.FileOutputFormat

checkOutputSpecs, getCompressOutput, getDefaultWorkFile, getOutputCommitter, getOutputCompressorClass, getOutputName, getOutputPath, getPathForWorkFile, getRecordWriter, getUniqueFile, getWorkOutputPath, setCompressOutput, setOutputCompressorClass, setOutputName, setOutputPath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CRAMOutputFormat

public CRAMOutputFormat()