de.unknownreality.dataframe.gtf

Enum GTFField

java.lang.Object

java.lang.Enum<GTFField>

de.unknownreality.dataframe.gtf.GTFField

All Implemented Interfaces:

Serializable, Comparable<GTFField>

public enum GTFField
extends Enum<GTFField>

Created by Alex on 19.05.2017. GTF fields are defined according to this documentation http://www.ensembl.org/info/website/upload/gff.html

Enum Constant Summary

Enum Constants

Enum Constant and Description
END
FEATURE
FRAME
SCORE
SEQNAME
SOURCE
START
STRAND

Field Summary

Fields

Modifier and Type	Field and Description
static Set<String>	GTF_FIELD_NAMES set containing all names of GTF fields

Method Summary

Modifier and Type	Method and Description
static GTFField	fromString(String str) Returns the GTF field matching an input string
Class<? extends de.unknownreality.dataframe.DataFrameColumn>	getColType() Column type of GTF field
int	getIndex()
String	getName() name of GTF field
static boolean	isGTFField(String name) returns true if the name matches a GTF field
Comparable	parseValue(String value) Parses an input string to the type specified by the respective column
String	toString()
static GTFField	valueOf(String name) Returns the enum constant of this type with the specified name.
static GTFField[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

SEQNAME

public static final GTFField SEQNAME

SOURCE

public static final GTFField SOURCE

FEATURE

public static final GTFField FEATURE

START

public static final GTFField START

END

public static final GTFField END

SCORE

public static final GTFField SCORE

STRAND

public static final GTFField STRAND

FRAME

public static final GTFField FRAME

Field Detail

GTF_FIELD_NAMES

public static final Set<String> GTF_FIELD_NAMES

set containing all names of GTF fields

Method Detail

values

public static GTFField[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GTFField c : GTFField.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GTFField valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

isGTFField

public static boolean isGTFField(String name)

returns true if the name matches a GTF field

Parameters:

name - input name

Returns:

if name of gtf field

getIndex

public int getIndex()

getName

public String getName()

name of GTF field

Returns:

field name

getColType

public Class<? extends de.unknownreality.dataframe.DataFrameColumn> getColType()

Column type of GTF field

Returns:

column type

parseValue

public Comparable parseValue(String value)

Parses an input string to the type specified by the respective column

Parameters:

value - input string

Returns:

parsed value

toString

public String toString()

Overrides:

toString in class Enum<GTFField>

fromString

public static GTFField fromString(String str)

Returns the GTF field matching an input string

Parameters:

str - input string

Returns:

matching GTF field