de.unknownreality.dataframe.gtf

Class GTFUtil

java.lang.Object

de.unknownreality.dataframe.gtf.GTFUtil

public class GTFUtil
extends Object

Constructor Summary

Constructors

Constructor and Description
GTFUtil()

Method Summary

Modifier and Type	Method and Description
static String[]	splitAttributes(String input) Splits the attributes part of a row in a GTF file into separate parts.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GTFUtil

public GTFUtil()

Method Detail

splitAttributes

public static String[] splitAttributes(String input)

Splits the attributes part of a row in a GTF file into separate parts. gene_id "ENSG00000223972"; gene_name "DDX11L1";" → ["gene_id","ENSG00000223972","gene_name","DDX11L1"] Escaping ( gene_name "xx\"xx"; ) and quotations (gene_name "xx;xx";) are considered.

Parameters:

input - attributes string

Returns:

array containing all attribute parts