A C D E F G I L M N O P R S T U V W

A

abort(Executor) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

acceptOrException(Observation) - Method in class de.sekmi.histream.i2b2.I2b2Inserter

addBatch() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

addBatch(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

ALLOW_WILDCARD_CONCEPT_CODES - Static variable in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

Boolean feature whether to allow wildcard concept keys.

C

cancel() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

clearBatch() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

clearParameters() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

clearWarnings() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

clearWarnings() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

close() - Method in class de.sekmi.histream.i2b2.I2b2Extractor

close() - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

close() - Method in class de.sekmi.histream.i2b2.I2b2Inserter

close() - Method in class de.sekmi.histream.i2b2.ont.Import

close() - Method in class de.sekmi.histream.i2b2.ont.SQLGenerator

close() - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

close() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

close() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

close() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

closeOnCompletion() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

commit() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

copyProperties(Map<String, String>, String, Properties) - Static method in class de.sekmi.histream.i2b2.ont.PostgresUtil

Each key in src that starts with keyPrefix is copied (without the prefix) and its value to dest

createArrayOf(String, Object[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createBlob() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createClob() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createInstance(Observation) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

createInstance(Object...) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

createInstance(Observation) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

createInstance(Object...) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

createNClob() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createSQLXML() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createStatement() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createStatement(int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createStatement(int, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

createStruct(String, Object[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

D

DataDialect - Class in de.sekmi.histream.i2b2

Configuration of exact meaning of values in observation_fact table.

DataDialect() - Constructor for class de.sekmi.histream.i2b2.DataDialect

de.sekmi.histream.i2b2 - package de.sekmi.histream.i2b2

Connectors for i2b2 integration.

de.sekmi.histream.i2b2.ont - package de.sekmi.histream.i2b2.ont

Interfaces to i2b2 ontology

de.sekmi.histream.i2b2.sql - package de.sekmi.histream.i2b2.sql

decodeInstant(Timestamp) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeInstantPartial(Timestamp) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeLocationCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeModifierCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeUnitCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeValueFlagCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

decodeValueTypeCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

deleteWhereSourceId(String) - Method in class de.sekmi.histream.i2b2.PostgresExtension

deleteWhereSourceId(String) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

deleteWhereSourceId(String) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

dump() - Method in class de.sekmi.histream.i2b2.I2b2Extractor

E

encodeInstant(Instant) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeInstantPartial(DateTimeAccuracy) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeLocationCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeOperator(Value) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeProviderId(String) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeUnitCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

encodeValueFlagCd(Value) - Method in class de.sekmi.histream.i2b2.DataDialect

errorHandler(SQLException) - Method in class de.sekmi.histream.i2b2.I2b2Extractor

Retrieves errors during the get() operation.

escapeString(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

execute() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

execute(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

execute(String, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

execute(String, int[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

execute(String, String[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeBatch() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeQuery() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

executeQuery(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeUpdate() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

executeUpdate(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeUpdate(String, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeUpdate(String, int[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

executeUpdate(String, String[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

extract(Instant, Instant, Iterable<String>) - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

F

findVisit(String) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

Find a visit.

flush() - Method in class de.sekmi.histream.i2b2.PostgresExtension

Write updates to disk.

flush() - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

flush() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

G

get() - Method in class de.sekmi.histream.i2b2.I2b2Extractor

getActiveStatusCd() - Method in class de.sekmi.histream.i2b2.I2b2Visit

Get the i2b2 vital_status_cd for this visit.

getAliasIds(Patient) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

getAutoCommit() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getCatalog() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getCause() - Method in exception de.sekmi.histream.i2b2.UncheckedSQLException

getClientInfo() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getClientInfo(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getConnection(Map<String, String>, String[]) - Static method in class de.sekmi.histream.i2b2.ont.PostgresUtil

getConnection() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getDefaultProviderId() - Method in class de.sekmi.histream.i2b2.DataDialect

getDeleteAccessCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getDeleteConceptCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getDeleteMetaCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getFetchDirection() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getFetchSize() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getGeneratedKeys() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getHoldability() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getInOutCd() - Method in class de.sekmi.histream.i2b2.I2b2Visit

getInsertAccessCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getInsertConceptCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getInsertCount() - Method in class de.sekmi.histream.i2b2.I2b2Inserter

getInsertMetaCount() - Method in class de.sekmi.histream.i2b2.ont.Import

getInstanceTypes() - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

getInstanceTypes() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

getMaxFieldSize() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getMaxRows() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getMeta(String) - Method in class de.sekmi.histream.i2b2.I2b2Extractor

getMetaData() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getMetaData() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

getMoreResults() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getMoreResults(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getNetworkTimeout() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getNullLocationCd() - Method in class de.sekmi.histream.i2b2.DataDialect

getNullModifierCd() - Method in class de.sekmi.histream.i2b2.DataDialect

getNullUnitCd() - Method in class de.sekmi.histream.i2b2.DataDialect

getNullValueFlagCd() - Method in class de.sekmi.histream.i2b2.DataDialect

getNullValueTypeCd() - Method in class de.sekmi.histream.i2b2.DataDialect

getNum() - Method in class de.sekmi.histream.i2b2.I2b2Patient

getNum() - Method in class de.sekmi.histream.i2b2.I2b2Visit

getObservationFactory() - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

getParameterMetaData() - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

getPatientNum() - Method in class de.sekmi.histream.i2b2.I2b2Visit

getQueryTimeout() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getResultSet() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getResultSetConcurrency() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getResultSetHoldability() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getResultSetType() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getSchema() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getTimeZone() - Method in class de.sekmi.histream.i2b2.DataDialect

getTransactionIsolation() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getTypeMap() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getUpdateCount() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

getVitalStatusCd() - Method in class de.sekmi.histream.i2b2.I2b2Patient

Get the i2b2 vital_status_cd for this patient.

getWarnings() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

getWarnings() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

I

I2b2Extractor - Class in de.sekmi.histream.i2b2

Retrieves observations from i2b2.

I2b2ExtractorFactory - Class in de.sekmi.histream.i2b2

Extract observations from i2b2.

I2b2ExtractorFactory(DataSource, ObservationFactory) - Constructor for class de.sekmi.histream.i2b2.I2b2ExtractorFactory

I2b2Inserter - Class in de.sekmi.histream.i2b2

Inserts observations in to the i2b2 observation_fact table.

I2b2Inserter() - Constructor for class de.sekmi.histream.i2b2.I2b2Inserter

I2b2Patient - Class in de.sekmi.histream.i2b2

I2b2 patient.

I2b2Patient(int) - Constructor for class de.sekmi.histream.i2b2.I2b2Patient

I2b2Patient(int, Patient.Sex, DateTimeAccuracy, DateTimeAccuracy) - Constructor for class de.sekmi.histream.i2b2.I2b2Patient

I2b2Visit - Class in de.sekmi.histream.i2b2

I2b2 visit.

I2b2Visit(int, int) - Constructor for class de.sekmi.histream.i2b2.I2b2Visit

Import - Class in de.sekmi.histream.i2b2.ont

Import ontology data into i2b2.

Import(Map<String, String>) - Constructor for class de.sekmi.histream.i2b2.ont.Import

Connect to the i2b2 database.

Import(Connection, Connection, Map<String, String>) - Constructor for class de.sekmi.histream.i2b2.ont.Import

isClosed() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

isClosed() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

isCloseOnCompletion() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

isDefaultProviderId(String) - Method in class de.sekmi.histream.i2b2.DataDialect

isNullLocationCd(String) - Method in class de.sekmi.histream.i2b2.DataDialect

isPoolable() - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

isReadOnly() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

isValid(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

isWrapperFor(Class<?>) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

isWrapperFor(Class<?>) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

L

loadMaxInstanceNums() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

lookupEncounterNum(Integer) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

lookupPatientNum(Integer) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

M

merge(Patient, String, ExternalSourceType) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

N

nativeSQL(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

O

open(Connection, DataDialect) - Method in class de.sekmi.histream.i2b2.I2b2Inserter

Initialize the database connection

open(Connection, String, DataDialect) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

open(Connection, String, DataDialect) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

P

PostgresExtension<T> - Class in de.sekmi.histream.i2b2

Extension with database connectivity.

PostgresExtension() - Constructor for class de.sekmi.histream.i2b2.PostgresExtension

PostgresPatientStore - Class in de.sekmi.histream.i2b2

Patient cache which synchronizes with i2b2 patient_dimension and patient_mapping tables.

PostgresPatientStore() - Constructor for class de.sekmi.histream.i2b2.PostgresPatientStore

PostgresUtil - Class in de.sekmi.histream.i2b2.ont

PostgresUtil() - Constructor for class de.sekmi.histream.i2b2.ont.PostgresUtil

PostgresVisitStore - Class in de.sekmi.histream.i2b2

Visit cache which synchronizes with an i2b2 visit_dimension table.

PostgresVisitStore() - Constructor for class de.sekmi.histream.i2b2.PostgresVisitStore

prepareCall(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareCall(String, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareCall(String, int, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String, int[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String, String[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatement(String, int, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

prepareStatements() - Method in class de.sekmi.histream.i2b2.PostgresExtension

prepareStatements() - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

prepareStatements() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

processOntology() - Method in class de.sekmi.histream.i2b2.ont.Import

purge(String) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

purgeSource(String) - Method in class de.sekmi.histream.i2b2.I2b2Inserter

Deletes all observations with the given sourceId

purgeVisit(int) - Method in class de.sekmi.histream.i2b2.I2b2Inserter

Deletes all observations for the given encounter_num

R

readableConceptPath(String) - Method in class de.sekmi.histream.i2b2.ont.Import

Build a readable representation of a concept path.

releaseSavepoint(Savepoint) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

resetInsertCount() - Method in class de.sekmi.histream.i2b2.I2b2Inserter

retrieve(String) - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

rollback() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

rollback(Savepoint) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

S

setActiveStatusCd(String) - Method in class de.sekmi.histream.i2b2.I2b2Visit

For decoding instructions, see the i2b2 documentation CRC_Design.pdf The vital cd can be one or two characters.

setArray(int, Array) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setAsciiStream(int, InputStream) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setAsciiStream(int, InputStream, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setAsciiStream(int, InputStream, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setAutoCommit(boolean) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setBigDecimal(int, BigDecimal) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBinaryStream(int, InputStream) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBinaryStream(int, InputStream, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBinaryStream(int, InputStream, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBlob(int, Blob) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBlob(int, InputStream) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBlob(int, InputStream, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBoolean(int, boolean) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setByte(int, byte) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setBytes(int, byte[]) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setCatalog(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setCharacterStream(int, Reader) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setCharacterStream(int, Reader, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setCharacterStream(int, Reader, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setClientInfo(Properties) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setClientInfo(String, String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setClob(int, Clob) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setClob(int, Reader) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setClob(int, Reader, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setCursorName(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setDate(int, Date) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setDate(int, Date, Calendar) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setDouble(int, double) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setEscapeProcessing(boolean) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setFeature(String, Object) - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

setFetchDirection(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setFetchSize(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setFloat(int, float) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setHoldability(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setInt(int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setLong(int, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setMaxFieldSize(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setMaxRows(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setMeta(String, String) - Method in class de.sekmi.histream.i2b2.I2b2Inserter

setNCharacterStream(int, Reader) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNCharacterStream(int, Reader, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNClob(int, NClob) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNClob(int, Reader) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNClob(int, Reader, long) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNetworkTimeout(Executor, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setNString(int, String) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNull(int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNull(int, int, String) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setNum(int) - Method in class de.sekmi.histream.i2b2.I2b2Patient

setObject(int, Object) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setObject(int, Object, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setObject(int, Object, int, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setOntology(Ontology) - Method in class de.sekmi.histream.i2b2.ont.Import

setPatientLookup(Function<Integer, ? extends Patient>) - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

setPoolable(boolean) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setProperty(String, Object) - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

setQueryTimeout(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

setReadOnly(boolean) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setRef(int, Ref) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setRejectPatientChange(boolean) - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

setRowId(int, RowId) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setSavepoint() - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setSavepoint(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setSchema(String) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setShort(int, short) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setSQLXML(int, SQLXML) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setString(int, String) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setTime(int, Time) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setTime(int, Time, Calendar) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setTimestamp(int, Timestamp) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setTimestamp(int, Timestamp, Calendar) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setTimeZone(ZoneId) - Method in class de.sekmi.histream.i2b2.DataDialect

setTransactionIsolation(int) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setTypeMap(Map<String, Class<?>>) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

setUnicodeStream(int, InputStream, int) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setURL(int, URL) - Method in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

setVisitLookup(Function<Integer, ? extends Visit>) - Method in class de.sekmi.histream.i2b2.I2b2ExtractorFactory

setVitalStatusCd(String) - Method in class de.sekmi.histream.i2b2.I2b2Patient

Set the vital status code, which also determines the accuracy of birth date and deceased date.

setWarningHandler(Consumer<String>) - Method in class de.sekmi.histream.i2b2.ont.Import

setWarningHandler(Consumer<String>) - Method in class de.sekmi.histream.i2b2.ont.SQLGenerator

size() - Method in class de.sekmi.histream.i2b2.PostgresPatientStore

Returns the number of patients which are currently available in memory.

size() - Method in class de.sekmi.histream.i2b2.PostgresVisitStore

sqlFragments - Variable in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

SQLGenerator - Class in de.sekmi.histream.i2b2.ont

SQLGenerator(BufferedWriter, BufferedWriter, Map<String, String>) - Constructor for class de.sekmi.histream.i2b2.ont.SQLGenerator

SQLGenerator(Path, Path, Map<String, String>, boolean) - Constructor for class de.sekmi.histream.i2b2.ont.SQLGenerator

sqlValues - Variable in class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

T

toString() - Method in class de.sekmi.histream.i2b2.I2b2Patient

toString() - Method in class de.sekmi.histream.i2b2.I2b2Visit

U

UncheckedSQLException - Exception in de.sekmi.histream.i2b2

UncheckedSQLException(SQLException) - Constructor for exception de.sekmi.histream.i2b2.UncheckedSQLException

unwrap(Class<T>) - Method in class de.sekmi.histream.i2b2.sql.VirtualConnection

unwrap(Class<T>) - Method in class de.sekmi.histream.i2b2.sql.VirtualStatement

V

VirtualConnection - Class in de.sekmi.histream.i2b2.sql

VirtualConnection(Consumer<String>) - Constructor for class de.sekmi.histream.i2b2.sql.VirtualConnection

VirtualPreparedStatement - Class in de.sekmi.histream.i2b2.sql

VirtualPreparedStatement(String, VirtualConnection) - Constructor for class de.sekmi.histream.i2b2.sql.VirtualPreparedStatement

VirtualStatement - Class in de.sekmi.histream.i2b2.sql

VirtualStatement(VirtualConnection) - Constructor for class de.sekmi.histream.i2b2.sql.VirtualStatement

W

writeOntologySQL(Ontology) - Method in class de.sekmi.histream.i2b2.ont.SQLGenerator

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