de.samply.directory_sync.fhir

Class FhirReporting

java.lang.Object

de.samply.directory_sync.fhir.FhirReporting

public class FhirReporting
extends Object

Provides functionality related to FHIR MeasureReports.

Constructor Summary

Constructors

Constructor and Description
FhirReporting(ca.uhn.fhir.context.FhirContext fhirContext, FhirApi fhirApi)

Method Summary

Modifier and Type	Method and Description
io.vavr.control.Either<org.hl7.fhir.r4.model.OperationOutcome,Map<BbmriEricId,Integer>>	fetchCollectionSizes() Returns collection sample counts indexed by BBMRI-ERIC identifier.
io.vavr.control.Either<String,Void>	initLibrary() Tries to create Library and Measure resources if not present on the FHIR server.
io.vavr.control.Either<String,Void>	initMeasure()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FhirReporting

public FhirReporting(ca.uhn.fhir.context.FhirContext fhirContext,
                     FhirApi fhirApi)

Method Detail

initLibrary

public io.vavr.control.Either<String,Void> initLibrary()

Tries to create Library and Measure resources if not present on the FHIR server.

Returns:

either an error or nothing

initMeasure

public io.vavr.control.Either<String,Void> initMeasure()

fetchCollectionSizes

public io.vavr.control.Either<org.hl7.fhir.r4.model.OperationOutcome,Map<BbmriEricId,Integer>> fetchCollectionSizes()

Returns collection sample counts indexed by BBMRI-ERIC identifier.

Executes the collection-size measure.

In case all samples are unassigned, meaning the stratum code has text null and only one collection exists, all that samples are assigned to this single collection.

Returns:

collection sample counts indexed by BBMRI-ERIC identifier or OperationOutcome indicating an error