A B C D E F G I K L M N O P Q R S T U V X

A

addHiveParam(String, String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

addProjectParam(String, String, String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

addUserParam(String, String, String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Add a parameter to the specified user's configuration.

appendOptionalElement(Element, String, String) - Method in class de.sekmi.li2b2.client.CellClient

Convenience method to append a text element to another element if and only if the supplied value is not null.

appendTextElement(Element, String, String) - Method in class de.sekmi.li2b2.client.CellClient

Convenience method to append a text element to another element

B

basecode - Variable in class de.sekmi.li2b2.client.ont.Concept

C

CellClient - Class in de.sekmi.li2b2.client

CellClient(Li2b2Client, URL) - Constructor for class de.sekmi.li2b2.client.CellClient

changePassword(String, String, char[], char[]) - Method in class de.sekmi.li2b2.client.pm.PMClient

Change the password of any user.

client - Variable in class de.sekmi.li2b2.client.CellClient

Concept - Class in de.sekmi.li2b2.client.ont

Concept() - Constructor for class de.sekmi.li2b2.client.ont.Concept

consoleLogger() - Static method in class de.sekmi.li2b2.client.FormattedMessageLogger

CRC() - Method in class de.sekmi.li2b2.client.Li2b2Client

CRCException - Exception in de.sekmi.li2b2.client.crc

An error condition was specified in the CRC response body.

CRCException(String) - Constructor for exception de.sekmi.li2b2.client.crc.CRCException

createConnection(HiveRequest, URL) - Method in class de.sekmi.li2b2.client.CellClient

Create the HTTP connection.

createRequest(String) - Method in class de.sekmi.li2b2.client.CellClient

createRequest(DocumentBuilder) - Method in class de.sekmi.li2b2.client.Li2b2Client

createRequestMessage(DocumentBuilder) - Method in class de.sekmi.li2b2.client.CellClient

Create a new HiveRequest message.

createRequestMessage() - Method in class de.sekmi.li2b2.client.CellClient

createRequestMessage(String) - Method in class de.sekmi.li2b2.client.CellClient

D

de.sekmi.li2b2.client - package de.sekmi.li2b2.client

de.sekmi.li2b2.client.crc - package de.sekmi.li2b2.client.crc

de.sekmi.li2b2.client.ont - package de.sekmi.li2b2.client.ont

de.sekmi.li2b2.client.pm - package de.sekmi.li2b2.client.pm

deleteHiveParam(int) - Method in class de.sekmi.li2b2.client.pm.PMClient

Delete a global hive parameter

deleteProjectParam(int) - Method in class de.sekmi.li2b2.client.pm.PMClient

Delete a project specific parameter

deleteQueryMaster(String) - Method in class de.sekmi.li2b2.client.crc.QueryClient

deleteRole(String, String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Delete one single Role for a specific user for one project.

deleteUser(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Delete one existing user

deleteUserParam(int) - Method in class de.sekmi.li2b2.client.pm.PMClient

Delete a user specific parameter.

description - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

E

email - Variable in class de.sekmi.li2b2.client.pm.User

end_date - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

end_date - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

exportAll() - Method in class de.sekmi.li2b2.client.ont.XMLExport

exportSubtree(String) - Method in class de.sekmi.li2b2.client.ont.XMLExport

F

FormattedMessageLogger - Class in de.sekmi.li2b2.client

FormattedMessageLogger() - Constructor for class de.sekmi.li2b2.client.FormattedMessageLogger

formatXML(Document) - Static method in class de.sekmi.li2b2.client.FormattedMessageLogger

full_name - Variable in class de.sekmi.li2b2.client.pm.User

G

getCategories() - Method in class de.sekmi.li2b2.client.ont.OntologyClient

Retrieve available ontology categories.

getCells() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getChildren(String, boolean) - Method in class de.sekmi.li2b2.client.ont.OntologyClient

getChildren(String) - Method in class de.sekmi.li2b2.client.ont.OntologyClient

getCredentials() - Method in class de.sekmi.li2b2.client.Li2b2Client

Get credentials used for all API calls to the server.

getElement() - Method in class de.sekmi.li2b2.client.crc.ResponseBody

getHiveParams(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Retrieve global hive parameters

getMasterId() - Method in class de.sekmi.li2b2.client.crc.MasterInstanceResult

getMessageLog() - Method in class de.sekmi.li2b2.client.Li2b2Client

Get the message logger.

getMetadataXML() - Method in class de.sekmi.li2b2.client.ont.Concept

getOutputCharset() - Method in class de.sekmi.li2b2.client.CellClient

getOutputEncoding() - Method in class de.sekmi.li2b2.client.Li2b2Client

getProjectId() - Method in class de.sekmi.li2b2.client.Li2b2Client

Get the project ID

getProjectParams(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Retrieve project specific parameters

getProjects() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getProxy() - Method in class de.sekmi.li2b2.client.Li2b2Client

getQueryInstanceList(String) - Method in class de.sekmi.li2b2.client.crc.QueryClient

Retrieve query executions (instances) for the given query master id

getQueryMasterList(String, String, int) - Method in class de.sekmi.li2b2.client.crc.QueryClient

Retrieve previous queries.

getQueryMasterList() - Method in class de.sekmi.li2b2.client.crc.QueryClient

Retrieve previous queries for the current user and project.

getQueryResultInstanceList(String) - Method in class de.sekmi.li2b2.client.crc.QueryClient

getResultDocument(String) - Method in class de.sekmi.li2b2.client.crc.QueryClient

Retrieve the result document for the given result id.

getResultType() - Method in class de.sekmi.li2b2.client.crc.QueryClient

getRoles() - Method in class de.sekmi.li2b2.client.pm.PMClient

Request the roles for a user for one project or all roles for one project or all roles of all users for all projects.

getRoles(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

getRoles(String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

getSchemes() - Method in class de.sekmi.li2b2.client.ont.OntologyClient

getServiceURL() - Method in class de.sekmi.li2b2.client.CellClient

getSessionKey() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getStatusCondition() - Method in class de.sekmi.li2b2.client.crc.ResponseBody

getUser(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Request one user specified with user_name

getUserDomain() - Method in class de.sekmi.li2b2.client.Li2b2Client

getUserDomain() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getUserFullName() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getUserLogin() - Method in class de.sekmi.li2b2.client.Li2b2Client

getUserName() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

getUserParams(String) - Method in class de.sekmi.li2b2.client.pm.PMClient

getUsers() - Method in class de.sekmi.li2b2.client.pm.PMClient

Request all existing users

group_id - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

I

initializeClient(String, String, String, String, String, String) - Static method in class de.sekmi.li2b2.client.Li2b2Client

Convenience method to obtain an initialized client instance.

is_admin - Variable in class de.sekmi.li2b2.client.pm.User

isAdmin() - Method in class de.sekmi.li2b2.client.pm.UserConfiguration

isFolder() - Method in class de.sekmi.li2b2.client.ont.Concept

K

key - Variable in class de.sekmi.li2b2.client.ont.Concept

L

level - Variable in class de.sekmi.li2b2.client.ont.Concept

Li2b2Client - Class in de.sekmi.li2b2.client

Client application to programmatically access any i2b2 server installation.

Li2b2Client() - Constructor for class de.sekmi.li2b2.client.Li2b2Client

Construct a new client instance.

logRequest(CellClient, URL, String) - Method in class de.sekmi.li2b2.client.FormattedMessageLogger

logRequest(CellClient, URL, Document) - Method in class de.sekmi.li2b2.client.FormattedMessageLogger

logRequest(CellClient, URL, Document) - Method in interface de.sekmi.li2b2.client.MessageLogger

logResponse(CellClient, URL, String) - Method in class de.sekmi.li2b2.client.FormattedMessageLogger

logResponse(CellClient, URL, Document, Document) - Method in class de.sekmi.li2b2.client.FormattedMessageLogger

logResponse(CellClient, URL, Document, Document) - Method in interface de.sekmi.li2b2.client.MessageLogger

M

main(String[]) - Static method in class de.sekmi.li2b2.client.ont.XMLExport

MasterInstanceResult - Class in de.sekmi.li2b2.client.crc

MasterInstanceResult() - Constructor for class de.sekmi.li2b2.client.crc.MasterInstanceResult

MessageLogger - Interface in de.sekmi.li2b2.client

N

name - Variable in class de.sekmi.li2b2.client.ont.Concept

newBuilder() - Method in class de.sekmi.li2b2.client.CellClient

O

ONT() - Method in class de.sekmi.li2b2.client.Li2b2Client

OntologyClient - Class in de.sekmi.li2b2.client.ont

OntologyClient(Li2b2Client, URL) - Constructor for class de.sekmi.li2b2.client.ont.OntologyClient

others - Variable in class de.sekmi.li2b2.client.ont.Concept

P

param - Variable in class de.sekmi.li2b2.client.pm.User

parse(Element) - Static method in class de.sekmi.li2b2.client.pm.Role

parse(Element) - Static method in class de.sekmi.li2b2.client.pm.User

parse(Element) - Static method in class de.sekmi.li2b2.client.pm.UserConfiguration

parseUser(Element) - Static method in class de.sekmi.li2b2.client.pm.User

parseXML(InputStream) - Method in class de.sekmi.li2b2.client.Li2b2Client

parseXML(String) - Method in class de.sekmi.li2b2.client.Li2b2Client

password - Variable in class de.sekmi.li2b2.client.pm.User

PM() - Method in class de.sekmi.li2b2.client.Li2b2Client

Get the PM cell client services.

PMClient - Class in de.sekmi.li2b2.client.pm

PMClient(Li2b2Client, URL) - Constructor for class de.sekmi.li2b2.client.pm.PMClient

printLogger(PrintStream) - Static method in class de.sekmi.li2b2.client.FormattedMessageLogger

project_id - Variable in class de.sekmi.li2b2.client.pm.Role

PSM_NS - Static variable in class de.sekmi.li2b2.client.crc.QueryClient

Q

query_instance - Variable in class de.sekmi.li2b2.client.crc.MasterInstanceResult

query_instance_id - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

query_instance_id - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

query_master - Variable in class de.sekmi.li2b2.client.crc.MasterInstanceResult

query_master_id - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

query_result_instance - Variable in class de.sekmi.li2b2.client.crc.MasterInstanceResult

query_result_type - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

query_status_type - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

query_status_type - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

QueryClient - Class in de.sekmi.li2b2.client.crc

QueryClient(Li2b2Client, URL) - Constructor for class de.sekmi.li2b2.client.crc.QueryClient

QueryInstance - Class in de.sekmi.li2b2.client.crc

QueryInstance() - Constructor for class de.sekmi.li2b2.client.crc.QueryInstance

QueryResultInstance - Class in de.sekmi.li2b2.client.crc

QueryResultInstance() - Constructor for class de.sekmi.li2b2.client.crc.QueryResultInstance

R

requestUserConfiguration() - Method in class de.sekmi.li2b2.client.pm.PMClient

Request the configuration for the current user.

requireConditionDone() - Method in class de.sekmi.li2b2.client.crc.ResponseBody

Require that the status condition specified in the response body equals DONE.

ResponseBody - Class in de.sekmi.li2b2.client.crc

ResponseBody(Element) - Constructor for class de.sekmi.li2b2.client.crc.ResponseBody

result_instance_id - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

Role - Class in de.sekmi.li2b2.client.pm

Role() - Constructor for class de.sekmi.li2b2.client.pm.Role

Empty constructor for JAXB

Role(String, String, String) - Constructor for class de.sekmi.li2b2.client.pm.Role

role - Variable in class de.sekmi.li2b2.client.pm.Role

runQueryInstance(Element, String[]) - Method in class de.sekmi.li2b2.client.crc.QueryClient

S

serviceUrl - Variable in class de.sekmi.li2b2.client.CellClient

set_size - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

setAuthorisation(String, String, String, boolean) - Method in class de.sekmi.li2b2.client.Li2b2Client

Deprecated.

setAuthorisation(String, String, String) - Method in class de.sekmi.li2b2.client.Li2b2Client

Deprecated.

setCRC(String) - Method in class de.sekmi.li2b2.client.Li2b2Client

setCredentials(String, String, String) - Method in class de.sekmi.li2b2.client.Li2b2Client

Set login credentials for password based authentication.

setCredentials(Credentials) - Method in class de.sekmi.li2b2.client.Li2b2Client

setMessageLog(MessageLogger) - Method in class de.sekmi.li2b2.client.Li2b2Client

Set a message logger which will receive all sent and received messages.

setONT(String) - Method in class de.sekmi.li2b2.client.Li2b2Client

Set the Ontology Service URI.

setPM(URL) - Method in class de.sekmi.li2b2.client.Li2b2Client

Set the PM service URL.

setProjectId(String) - Method in class de.sekmi.li2b2.client.Li2b2Client

Set the project id which will be used during hive communcations.

setProxy(URL) - Method in class de.sekmi.li2b2.client.Li2b2Client

Use a reverse proxy configuration (proprietary protocol by i2b2) if the i2b2 webservices are not directly available via network.

setRole(String, String, String) - Method in class de.sekmi.li2b2.client.pm.PMClient

Set one Role for a user for one project.

setServices(Cell[]) - Method in class de.sekmi.li2b2.client.Li2b2Client

Initialize services using URIs from the provided Cell[] structure.

setUser(User) - Method in class de.sekmi.li2b2.client.pm.PMClient

setUser(String, String, String, String, boolean) - Method in class de.sekmi.li2b2.client.pm.PMClient

Update or create user with username, fullname, email and password

start_date - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

start_date - Variable in class de.sekmi.li2b2.client.crc.QueryResultInstance

submitRequest(HiveRequest, String) - Method in class de.sekmi.li2b2.client.CellClient

submitRequest(DocumentBuilder, HiveRequest, URL) - Method in class de.sekmi.li2b2.client.CellClient

submitRequestWithResponseContent(HiveRequest, String, String, String) - Method in class de.sekmi.li2b2.client.CellClient

Submit a HiveRequest and expect the HiveResponse body to contain the specified XML element.

T

tooltip - Variable in class de.sekmi.li2b2.client.ont.Concept

toString() - Method in class de.sekmi.li2b2.client.pm.Role

toString() - Method in class de.sekmi.li2b2.client.pm.User

totalnum - Variable in class de.sekmi.li2b2.client.ont.Concept

U

unmarshalBodyElements(Class<T>, String) - Method in class de.sekmi.li2b2.client.crc.ResponseBody

User - Class in de.sekmi.li2b2.client.pm

User() - Constructor for class de.sekmi.li2b2.client.pm.User

user_id - Variable in class de.sekmi.li2b2.client.crc.QueryInstance

user_name - Variable in class de.sekmi.li2b2.client.pm.Role

user_name - Variable in class de.sekmi.li2b2.client.pm.User

UserConfiguration - Class in de.sekmi.li2b2.client.pm

UserConfiguration() - Constructor for class de.sekmi.li2b2.client.pm.UserConfiguration

V

visualattributes - Variable in class de.sekmi.li2b2.client.ont.Concept

X

XMLExport - Class in de.sekmi.li2b2.client.ont

XMLExport(OntologyClient, Writer) - Constructor for class de.sekmi.li2b2.client.ont.XMLExport

XMLNS - Static variable in class de.sekmi.li2b2.client.ont.OntologyClient

XMLNS - Static variable in class de.sekmi.li2b2.client.pm.PMClient

A B C D E F G I K L M N O P Q R S T U V X