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C

computeSimilarity(double[], double[]) - Static method in class de.julielab.topicmodeling.services.MalletTopicModeling

D

de.julielab.topicmodeling - package de.julielab.topicmodeling

de.julielab.topicmodeling.businessobjects - package de.julielab.topicmodeling.businessobjects

de.julielab.topicmodeling.services - package de.julielab.topicmodeling.services

Document - Class in de.julielab.topicmodeling.businessobjects

Document() - Constructor for class de.julielab.topicmodeling.businessobjects.Document

G

generateTopicModel(String, String, String) - Method in class de.julielab.topicmodeling.MalletTopicModelGenerator

generateTopicModelFromDatabase(String, String) - Method in class de.julielab.topicmodeling.MalletTopicModelGenerator

getId(JCas) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

getLemmata(JCas) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

getVocabulary(Model) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

I

id - Variable in class de.julielab.topicmodeling.businessobjects.Document

id - Variable in class de.julielab.topicmodeling.businessobjects.Topic

index - Variable in class de.julielab.topicmodeling.businessobjects.Model

inferLabel(Document, Model, XMLConfiguration) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

inferLabel(Document, Model, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

The argument topicWords has to be passed here due to performance reasons; this object is available in every model.malletModel by the method getTopWords()

inferLabel(JCas, Model, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

The argument topicWords has to be passed here due to performance reasons; this object is available in every model.malletModel by the method getTopWords()

isNotNum(String) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

Filters simple numbers that does not have real semantics

isNotPunctuation(String) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

ITopicModeling - Interface in de.julielab.topicmodeling.services

J

jcorePreprocess(List<Document>) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

L

loadConfig(String) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

M

main(String[]) - Static method in class de.julielab.topicmodeling.MalletTopicModelGenerator

main(String[]) - Static method in class de.julielab.topicmodeling.MalletTopicModelInformer

malletId - Variable in class de.julielab.topicmodeling.businessobjects.TMSearchResult

malletModel - Variable in class de.julielab.topicmodeling.businessobjects.Model

malletPreprocess(List<TokenSequence>) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

MalletTopicModelGenerator - Class in de.julielab.topicmodeling

MalletTopicModelGenerator() - Constructor for class de.julielab.topicmodeling.MalletTopicModelGenerator

MalletTopicModelInformer - Class in de.julielab.topicmodeling

MalletTopicModelInformer() - Constructor for class de.julielab.topicmodeling.MalletTopicModelInformer

MalletTopicModeling - Class in de.julielab.topicmodeling.services

MalletTopicModeling() - Constructor for class de.julielab.topicmodeling.services.MalletTopicModeling

mapMalletIdToPubmedId(List<Document>, Model) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

mapPubmedIdToMalletId(List<Document>, Model) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

Model - Class in de.julielab.topicmodeling.businessobjects

Model() - Constructor for class de.julielab.topicmodeling.businessobjects.Model

modelId - Variable in class de.julielab.topicmodeling.businessobjects.Model

modelId - Variable in class de.julielab.topicmodeling.businessobjects.Topic

ModelIdpubmedId - Variable in class de.julielab.topicmodeling.businessobjects.Model

modelVersion - Variable in class de.julielab.topicmodeling.businessobjects.Model

modelVersion - Variable in class de.julielab.topicmodeling.businessobjects.Topic

P

preprocess(List<Document>) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

preprocessedData - Variable in class de.julielab.topicmodeling.businessobjects.Document

printTopicsPerDocumentToFile(File, Model) - Static method in class de.julielab.topicmodeling.MalletTopicModelInformer

printTopicsToFile(File, Model) - Method in class de.julielab.topicmodeling.MalletTopicModelGenerator

probabilities - Variable in class de.julielab.topicmodeling.businessobjects.TMSearchResult

probability - Variable in class de.julielab.topicmodeling.businessobjects.Topic

pubmedID - Variable in class de.julielab.topicmodeling.businessobjects.TMSearchResult

pubmedIdModelId - Variable in class de.julielab.topicmodeling.businessobjects.Model

R

readDocuments(File, XMLConfiguration) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

readDocuments(File, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

readMalletModel(File) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

readModel(String) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

readModel(String) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

readXmiDb(MalletTopicModeling, HierarchicalConfiguration<ImmutableNode>) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

S

saveMalletModel(Model, File) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

saveModel(Model, String) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

saveModel(Model, String) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

search(Document, Model, XMLConfiguration) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

search(Document, Model, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

searchIndexOnly(Document, Model, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

searchModelOnly(Document, Model, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

T

text - Variable in class de.julielab.topicmodeling.businessobjects.Document

TMSearchResult - Class in de.julielab.topicmodeling.businessobjects

TMSearchResult() - Constructor for class de.julielab.topicmodeling.businessobjects.TMSearchResult

Topic - Class in de.julielab.topicmodeling.businessobjects

Topic() - Constructor for class de.julielab.topicmodeling.businessobjects.Topic

topicWords - Variable in class de.julielab.topicmodeling.businessobjects.Topic

Deprecated.

it doesn't seem very practical to carry the topic words around especially since they need to be compute quite costly. From now on we test the approach of offering a separate possibility to get the words per topic (which is an output of the training, if activated)

train(List<Document>, XMLConfiguration) - Method in interface de.julielab.topicmodeling.services.ITopicModeling

train(List<Document>, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

train(InstanceList, XMLConfiguration) - Method in class de.julielab.topicmodeling.services.MalletTopicModeling

V

verifyModel(String, String) - Method in class de.julielab.topicmodeling.MalletTopicModelGenerator

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