Index (JULIE Lab Neo4j Concept Management Plugin 1.7.3 API)

A B C D E F G H I J K L M N O P Q R S T U V W

A

add(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
ADD_TERM_VARIANTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
addCopyProperty(String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addElementSourceId(String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addGeneralLabel(String...) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addGeneralLabel(String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
addParent(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addParentCriterium(AddToNonFacetGroupCommand.ParentCriterium) - Method in class de.julielab.neo4j.plugins.datarepresentation.AddToNonFacetGroupCommand
addParentIfNotExists(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addProperty(String, String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship
addQualifier(String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
addRelationship(ImportFacetTermRelationship) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
AddToNonFacetGroupCommand - Class in de.julielab.neo4j.plugins.datarepresentation
AddToNonFacetGroupCommand() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.AddToNonFacetGroupCommand
AddToNonFacetGroupCommand.ParentCriterium - Enum in de.julielab.neo4j.plugins.datarepresentation
addUniqueLabel(String) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
addUniqueLabelsToNode(GraphDatabaseService, Node, JSONArray) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.UniqueLabelsManager: Deprecated.
addUniqueLabelToNode(GraphDatabaseService, Node, String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.UniqueLabelsManager: Deprecated.
addWritingVariants(GraphDatabaseService, String, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
AGGREGATE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format.
aggregate - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
AGGREGATE_INCLUDE_IN_HIERARCHY - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Applies to aggregate terms which are explicitly imported.
AGGREGATE_SOURCES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
AGGREGATE_TERM - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeIDPrefixConstants
AggregateConstants - Class in de.julielab.neo4j.plugins.constants.semedico
AggregateConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.AggregateConstants
aggregateIncludeInHierarchy - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
aggregateSources - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept: Deprecated.
AGGREGATION_LABELS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: For facets that are just an aggregation of other facets, this property defines a list of facet labels identifying those facets to be used for the aggregation.
aggregationFields - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
aggregationLabels - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet

B

BUILD_AGGREGATES_BY_MAPPINGS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
BUILD_AGGREGATES_BY_NAME_AND_SYNONYMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
buildAggregatesByMappigs(GraphDatabaseService, String, String, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
buildAggregatesByNameAndSynonyms(GraphDatabaseService, String, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
buildAggregatesForEqualNames(GraphDatabaseService, String, JSONArray) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder: Aggregates terms that have equal preferred name and synonyms, after some minor normalization.
buildAggregatesForMappings(GraphDatabaseService, Set<String>, Label, Label) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder

C

clone() - Method in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
compare(Node, Node) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermNameAndSynonymComparator
compare(String, String) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermVariantComparator
ConceptConstants - Class in de.julielab.neo4j.plugins.constants.semedico
ConceptConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
ConceptConstants.IdType - Enum in de.julielab.neo4j.plugins.constants.semedico: Deprecated.
should be merged with ConceptCoordinates enum
ConceptCoordinates - Class in de.julielab.neo4j.plugins.datarepresentation
ConceptCoordinates() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(String, String, String, String, boolean) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(String, String, String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(String, String, boolean) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(String, String, CoordinateType) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(JSONObject) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(JSONObject, boolean) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptCoordinates(ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
ConceptInsertionResponse - Class in de.julielab.neo4j.plugins.datarepresentation: A convenience class to parse the HTTP response from the ConceptManager.INSERT_TERMS plugin endpoint in another application.
ConceptInsertionResponse() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ConceptInsertionResponse
ConceptManager - Class in de.julielab.neo4j.plugins
ConceptManager() - Constructor for class de.julielab.neo4j.plugins.ConceptManager
ConceptManager.EdgeTypes - Enum in de.julielab.neo4j.plugins
ConceptManager.MorphoLabel - Enum in de.julielab.neo4j.plugins: Labels for nodes representing lexico-morphological variations of terms.
ConceptManager.TermLabel - Enum in de.julielab.neo4j.plugins
ConceptRelationConstants - Class in de.julielab.neo4j.plugins.constants.semedico
ConceptRelationConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.ConceptRelationConstants
contains(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
contains(ConceptCoordinates, boolean) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
containsKey(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap
COORD_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
Use default properties on ConceptCoordinates instead
COORD_SOURCE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
Use default properties on ConceptCoordinates instead
CoordinateConstants - Class in de.julielab.neo4j.plugins.constants.semedico
CoordinateConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants
coordinates - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
CoordinatesInvalidException - Exception in de.julielab.neo4j.plugins.datarepresentation
CoordinatesInvalidException() - Constructor for exception de.julielab.neo4j.plugins.datarepresentation.CoordinatesInvalidException
CoordinatesInvalidException(String, Throwable, boolean, boolean) - Constructor for exception de.julielab.neo4j.plugins.datarepresentation.CoordinatesInvalidException
CoordinatesInvalidException(String, Throwable) - Constructor for exception de.julielab.neo4j.plugins.datarepresentation.CoordinatesInvalidException
CoordinatesInvalidException(String) - Constructor for exception de.julielab.neo4j.plugins.datarepresentation.CoordinatesInvalidException
CoordinatesInvalidException(Throwable) - Constructor for exception de.julielab.neo4j.plugins.datarepresentation.CoordinatesInvalidException
CoordinatesMap - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
CoordinatesMap() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap
CoordinatesSet - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
CoordinatesSet() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
CoordinateType - Enum in de.julielab.neo4j.plugins.datarepresentation
COPY_AGGREGATE_PROPERTIES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
copyAggregateProperties(Node, String[], TermAggregateBuilder.CopyAggregatePropertiesStatistics) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder: Fills aggregate with property values from its elements.
copyAggregateProperties(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager
CopyAggregatePropertiesStatistics() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder.CopyAggregatePropertiesStatistics
copyProperties - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
CREATE_SCHEMA_INDEXES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
createFacet(GraphDatabaseService, JSONObject) - Static method in class de.julielab.neo4j.plugins.FacetManager
createHollowAggregateElements - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportOptions: When set to true, aggregate elements that cannot be found will be created as nodes with the "hollow" label when explicitly importing aggregates.
createSchemaIndexes(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager
cssId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
cutParents - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportOptions: Parents to "cut away" when seen, e.g.

D

de.julielab.neo4j.plugins - package de.julielab.neo4j.plugins
de.julielab.neo4j.plugins.auxiliaries.semedico - package de.julielab.neo4j.plugins.auxiliaries.semedico
de.julielab.neo4j.plugins.constants.semedico - package de.julielab.neo4j.plugins.constants.semedico
de.julielab.neo4j.plugins.datarepresentation - package de.julielab.neo4j.plugins.datarepresentation
de.julielab.neo4j.plugins.evaluators - package de.julielab.neo4j.plugins.evaluators
DELETE_AGGREGATES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
deleteAggregates(GraphDatabaseService, Label) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder
deleteAggregatesByMappigs(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
descriptions - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
determineMappedSubgraph(Set<String>, Label, Node, Set<Node>, Set<Node>) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder
displayName - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
doNotCreateHollowParents - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportOptions: When set to true, parents that are not included in the insertion data will be dropped and the concept specifying the missing parent will be made a facet root.

E

ELEMENT_COORDINATES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format of aggregate terms.
ELEMENT_SOURCES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
use ConceptConstants.ELEMENT_COORDINATES instead
ELEMENT_SRC_IDS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
use ConceptConstants.ELEMENT_COORDINATES instead
ELEMENT_TO_AGGREGATE_ID_MAPPING - Static variable in class de.julielab.neo4j.plugins.Export
elementCoordinates - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
elementSources - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept: Deprecated.
elementSrcIds - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept: Deprecated.
eligibleTermDefinition - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand
equals(Object) - Method in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
equals(Object) - Method in class de.julielab.neo4j.plugins.datarepresentation.TermCoordinates: Deprecated.
evaluate(Path) - Method in class de.julielab.neo4j.plugins.evaluators.FacetGroupPathEvaluator
evaluate(Path) - Method in class de.julielab.neo4j.plugins.evaluators.FacetGroupsEvaluator
evaluate(Path) - Method in class de.julielab.neo4j.plugins.evaluators.HasRelationShipEvaluator
evaluate(Path) - Method in class de.julielab.neo4j.plugins.evaluators.NodeLabelEvaluator
evaluate(Path) - Method in class de.julielab.neo4j.plugins.evaluators.PropertyEvaluator
excludeTermDefinition - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand
excludeTerms(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager
Export - Class in de.julielab.neo4j.plugins
Export() - Constructor for class de.julielab.neo4j.plugins.Export
EXPORT_ENDPOINT - Static variable in class de.julielab.neo4j.plugins.Export: The REST context path to this plugin.
exportElementToAggregateIdMapping(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.Export
exportHypernyms(GraphDatabaseService, String, String) - Method in class de.julielab.neo4j.plugins.Export
exportIdMapping(GraphDatabaseService, String, String) - Method in class de.julielab.neo4j.plugins.Export
exportLingpipeDictionary(GraphDatabaseService, String, String, String[]) - Method in class de.julielab.neo4j.plugins.Export
exportTermFacetMapping(GraphDatabaseService, String) - Static method in class de.julielab.neo4j.plugins.Export

F

FACET - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeIDPrefixConstants
facet - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
FACET_FIELD_PREFIX - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
FACET_GROUP - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: Used when inserting facets to specify the facet group they are to be connected to.
FACET_GROUP - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeIDPrefixConstants
FacetConstants - Class in de.julielab.neo4j.plugins.constants.semedico
FacetConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
facetGroup - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
FacetGroupConstants - Class in de.julielab.neo4j.plugins.constants.semedico
FacetGroupConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.FacetGroupConstants
FacetGroupPathEvaluator - Class in de.julielab.neo4j.plugins.evaluators: An Evaluator which includes the facet groups node as well as the facet group with the name passed to the constructor.
FacetGroupPathEvaluator(String) - Constructor for class de.julielab.neo4j.plugins.evaluators.FacetGroupPathEvaluator
FacetGroupsEvaluator - Class in de.julielab.neo4j.plugins.evaluators: Evaluates to Evaluation.INCLUDE_AND_CONTINUE for the facet groups node, i.e.
FacetGroupsEvaluator() - Constructor for class de.julielab.neo4j.plugins.evaluators.FacetGroupsEvaluator
facetId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptInsertionResponse
facetLabel - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
FacetManager - Class in de.julielab.neo4j.plugins
FacetManager() - Constructor for class de.julielab.neo4j.plugins.FacetManager
FacetManager.EdgeTypes - Enum in de.julielab.neo4j.plugins
FacetManager.FacetLabel - Enum in de.julielab.neo4j.plugins
facetProperties - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet: A JSON object encoding arbitrary properties which are then applied directy to the resulting facet node in the Neo4j database.
facetPropertyKey - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
facetPropertyValue - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
filterFieldNames - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet

G

generalLabels - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
generalLabels - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
generalLabels - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
get(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap
get(ConceptCoordinates) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
GET_CHILDREN_OF_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
GET_FACET_ROOTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
GET_FACET_SIZE - Static variable in class de.julielab.neo4j.plugins.FacetManager
GET_FACETS - Static variable in class de.julielab.neo4j.plugins.FacetManager
GET_NUM_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
GET_PATHS_FROM_FACETROOTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
getAcronymsTraversal(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals
getChildrenOfTerms(GraphDatabaseService, String, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
getFacetGroupsNode(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.FacetManager
getFacetGroupTraversal(GraphDatabaseService, String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals: This traversal returns two nodes, viz.
getFacetNode(GraphDatabaseService, String) - Static method in class de.julielab.neo4j.plugins.FacetManager
getFacetRoots(GraphDatabaseService, String, String, long) - Method in class de.julielab.neo4j.plugins.ConceptManager
getFacets(GraphDatabaseService, Boolean) - Method in class de.julielab.neo4j.plugins.FacetManager
getFacetSize(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.FacetManager
getFacetTraversal(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals: Beginning at the facet groups node, this traversal returns all facets.
getFacetTraversal(GraphDatabaseService, String, Object) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals: Beginning at the facet groups node, this traversal returns all facets matching the given property key and property value.
getMatchingAggregates(Node, Set<String>, Label) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder: Returns all the aggregate nodes where conceptNode is an element of and where the aggregate is exactly of the mapping types specified in allowedMappingTypes.
getNextSequenceValue(GraphDatabaseService, String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.SequenceManager
getNodeIdentifier(Node) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities
getNodeRelationshipsString(Node) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities
getNoFacet(GraphDatabaseService, String) - Static method in class de.julielab.neo4j.plugins.FacetManager
getNoFacetGroupsNode(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.FacetManager
getNonAggregateAggregateElements(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals
getNumTerms(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager
getParentCriteria() - Method in class de.julielab.neo4j.plugins.datarepresentation.AddToNonFacetGroupCommand
getPathsFromFacetroots(GraphDatabaseService, String, String, boolean, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
getPropertyValueOfElements(Node, String) - Static method in class de.julielab.neo4j.plugins.ConceptManager: Concatenates the values of the elements of aggregate and returns them as an array.
getSourcesForSourceId(Node, String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities
getTopAggregates(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals
getWritingVariantsTraversal(GraphDatabaseService) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals

H

hashCode() - Method in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
hashCode() - Method in class de.julielab.neo4j.plugins.datarepresentation.TermCoordinates: Deprecated.
hasParents() - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
HasRelationShipEvaluator - Class in de.julielab.neo4j.plugins.evaluators
HasRelationShipEvaluator(Direction, RelationshipType[], boolean) - Constructor for class de.julielab.neo4j.plugins.evaluators.HasRelationShipEvaluator
HYPERNYMS - Static variable in class de.julielab.neo4j.plugins.Export
HYPERNYMS_CACHE_SIZE - Static variable in class de.julielab.neo4j.plugins.Export

I

id - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
id - Variable in class de.julielab.neo4j.plugins.datarepresentation.TermCoordinates: Deprecated.
id1 - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportMapping
id2 - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportMapping
ImportConcept - Class in de.julielab.neo4j.plugins.datarepresentation
ImportConcept(String, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, String, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, String, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, String, ConceptCoordinates, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, String, ConceptCoordinates, List<ConceptCoordinates>) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, List<String>, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, List<String>, ConceptCoordinates, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, List<String>, ConceptCoordinates, List<ConceptCoordinates>) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, List<String>, List<String>, ConceptCoordinates, List<ConceptCoordinates>, Boolean) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, ConceptCoordinates, ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(String, ConceptCoordinates, List<ConceptCoordinates>) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept(List<TermCoordinates>, List<String>) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept: Constructor for aggregate terms.
ImportConcept(ConceptCoordinates) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConcept() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ImportConceptAndFacet - Class in de.julielab.neo4j.plugins.datarepresentation
ImportConceptAndFacet(List<ImportConcept>, ImportFacet) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
ImportConceptAndFacet(ImportFacet) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
ImportConceptAndFacet(List<ImportConcept>, ImportFacet, ImportOptions) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
ImportFacet - Class in de.julielab.neo4j.plugins.datarepresentation
ImportFacet(String, String, String, List<String>, List<String>, int, List<String>, ImportFacetGroup) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
ImportFacet(String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
ImportFacetGroup - Class in de.julielab.neo4j.plugins.datarepresentation
ImportFacetGroup(String, int, List<String>) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
ImportFacetGroup(String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
ImportFacetTermRelationship - Class in de.julielab.neo4j.plugins.datarepresentation
ImportFacetTermRelationship(String, String, String, ConceptConstants.IdType) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship
ImportMapping - Class in de.julielab.neo4j.plugins.datarepresentation
ImportMapping(String, String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportMapping
importOptions - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
ImportOptions - Class in de.julielab.neo4j.plugins.datarepresentation
ImportOptions() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportOptions
ImportOptions(boolean) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.ImportOptions
includeTerms(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager
incucingTerm - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
INDEX_GENERAL_LABELS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
INDEX_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
INDEX_ROOT_NODES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants: An index for "anchor" nodes.
INDEX_UNIQUE_LABELS - Static variable in class de.julielab.neo4j.plugins.auxiliaries.semedico.UniqueLabelsManager: Deprecated.
INSERT_FACETS - Static variable in class de.julielab.neo4j.plugins.FacetManager
INSERT_MAPPINGS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
INSERT_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
insertFacets(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.FacetManager
insertFacetTerms(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
insertFacetTerms(GraphDatabaseService, String, String, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
insertMappings(GraphDatabaseService, String) - Method in class de.julielab.neo4j.plugins.ConceptManager
isEmpty() - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap
isEmpty() - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet
isSourceUnique(Node, String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities: Iterates over source IDs and source ID unique markers.
iterator() - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesSet

J

JsonSerializer - Class in de.julielab.neo4j.plugins.datarepresentation
JsonSerializer() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.JsonSerializer

K

KEY_AGGREGATED_LABEL - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_ALLOWED_MAPPING_TYPES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_AMOUNT - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_CREATE_HOLLOW_PARENTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACET - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACET_ID - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACET_IDS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACET_PROP_KEY - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACET_PROP_VALUE - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_FACETS - Static variable in class de.julielab.neo4j.plugins.FacetManager: Key of the map to send to the FacetManager.INSERT_FACETS endpoint.
KEY_ID - Static variable in class de.julielab.neo4j.plugins.FacetManager
KEY_ID_TYPE - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_IMPORT_OPTIONS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_LABEL - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_MAPPINGS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_MAX_ROOTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_SORT_RESULT - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_ACRONYMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_IDS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_PROP_KEY - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_PROP_VALUE - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_PROP_VALUES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_PUSH_CMD - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERM_VARIANTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
KEY_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager: The key of the map to send to the ConceptManager.INSERT_TERMS endpoint.
KEY_TIME - Static variable in class de.julielab.neo4j.plugins.ConceptManager
keySet() - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap

L

LINGPIPE_DICT - Static variable in class de.julielab.neo4j.plugins.Export
load(Node, Map<Node, Set<String>>, RelationshipType[]) - Method in class de.julielab.neo4j.plugins.Export

M

mappingType - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportMapping
merge - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportOptions: If set to true, only merging is performed, i.e.
mergeConceptNodesWithUniqueSourceId(String, Index<Node>, List<Node>) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities
MorphoConstants - Class in de.julielab.neo4j.plugins.constants.semedico
MorphoConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.MorphoConstants
MorphoRelationConstants - Class in de.julielab.neo4j.plugins.constants.semedico
MorphoRelationConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.MorphoRelationConstants

N

name - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
name - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
NAME_FACET_GROUPS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
NAME_NO_FACET_GROUPS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
NAME_SEQUENCES_ROOT - Static variable in class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
NO_FACET - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: Import option.
NodeConstants - Class in de.julielab.neo4j.plugins.constants.semedico
NodeConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
NodeConstants.Labels - Enum in de.julielab.neo4j.plugins.constants.semedico
NodeIDPrefixConstants - Class in de.julielab.neo4j.plugins.constants.semedico
NodeIDPrefixConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.NodeIDPrefixConstants
NodeLabelEvaluator - Class in de.julielab.neo4j.plugins.evaluators
NodeLabelEvaluator(Label, boolean) - Constructor for class de.julielab.neo4j.plugins.evaluators.NodeLabelEvaluator
NodeLabelEvaluator(Label) - Constructor for class de.julielab.neo4j.plugins.evaluators.NodeLabelEvaluator
NodeUtilities - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
NodeUtilities() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.NodeUtilities
noFacet - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
noFacetCmd - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportOptions: A command to specify terms to append to the "no facet" facet group.
normalizeVariant(String) - Static method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermVariantComparator
numCreatedRelationships - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptInsertionResponse
numCreatedTerms - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptInsertionResponse
numElements - Variable in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder.CopyAggregatePropertiesStatistics
numProperties - Variable in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder.CopyAggregatePropertiesStatistics

O

obsolete - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
ORIGINAL_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants
ORIGINAL_SOURCE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants
originalId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
originalSource - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
OUTPUTSTREAM_INIT_SIZE - Static variable in class de.julielab.neo4j.plugins.Export

P

PARAM_EXCLUSION_LABEL - Static variable in class de.julielab.neo4j.plugins.Export
PARAM_FURTHER_PROPERTIES - Static variable in class de.julielab.neo4j.plugins.Export: Deprecated.
PARAM_ID_PROPERTY - Static variable in class de.julielab.neo4j.plugins.Export
PARAM_LABEL - Static variable in class de.julielab.neo4j.plugins.Export
PARAM_LABELS - Static variable in class de.julielab.neo4j.plugins.Export
PARAM_RETURN_HOLLOW_FACETS - Static variable in class de.julielab.neo4j.plugins.FacetManager
PARENT_COORDINATES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format.
parentCoordinates - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
POP_TERMS_FROM_SET - Static variable in class de.julielab.neo4j.plugins.ConceptManager
popTermsFromSet(GraphDatabaseService, String, int) - Method in class de.julielab.neo4j.plugins.ConceptManager
position - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
PredefinedTraversals - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
PredefinedTraversals() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.PredefinedTraversals
prefName - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
PROP_ACTIVE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: Boolean property to indicate whether the facet is active - should be loaded and shown in the system - or not.
PROP_AGGREGATION_FIELDS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: For facets that are just an aggregation of other facets, this property defines a list of index fields to directly draw terms from.
PROP_CHILDREN_IN_FACETS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Property that stores for database terms, which facets define children for them.
PROP_COORDINATES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_COPY_PROPERTIES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Property of aggregate terms.
PROP_COUNTS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.MorphoRelationConstants
PROP_CSS_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
PROP_DESCRIPTIONS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_DISPLAY_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: The name which should be displayed in Semedico, e.g.
PROP_DOCS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.MorphoRelationConstants
PROP_EVENT_VALENCE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
PROP_FACETS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_FILTER_FIELD_NAMES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: The names of Lucene fields on which filtering should be performed when a term of a particular facet is used for Lucene filtering.
PROP_GENERAL_LABELS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants: This node property may be used to add list of labels - in a more general sense - to a node.
PROP_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
PROP_INDUCING_TERM - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: For facets that are induced by a term, i.e.
PROP_MAPPING_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Property for aggregates.
PROP_MAPPING_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptRelationConstants
PROP_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.MorphoConstants
PROP_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
PROP_NUM_ROOT_TERMS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: The number of roots a facet has.
PROP_OBSOLETE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Boolean property to indicate whether the facet was marked obsolete.
PROP_ORG_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_ORG_SRC - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_POSITION - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
PROP_POSITION - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetGroupConstants
PROP_PREF_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: The name by which a term should be references preferably.
PROP_PROPERTIES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants: This property is supposed to contain a String representing a JSON map with arbitrary key-value pairs.
PROP_QUALIFIERS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants: An array of qualifier strings for a node.
PROP_SEARCH_FIELD_NAMES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: The names of Lucene fields which should be searched when looking for terms included in a particular facet.
PROP_SHORT_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: An optional short name for display at places that lack more space.
PROP_SOURCE_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: The name of the Lucene field which is the source of the term IDs for a facet when e.g.
PROP_SOURCE_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: The type of content of the Lucene fields indentified by FacetConstants.PROP_SOURCE_NAME.
PROP_SOURCES - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_SPECIFIC_EVENT_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Deprecated.
PROP_SRC_IDS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_SYNONYMS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Name other than the preferred name that mean the same thing.
PROP_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants: Deprecated.
PROP_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetGroupConstants: (Optional?) Property to canonically specify which type this facet group is, e.g.
PROP_UNIQUE_LABELS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants: The value of this property is a list of boolean properties where each property may exist at most once in the database.
PROP_UNIQUE_SRC_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
PROP_VALUE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
PROP_WRITING_VARIANTS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Writing variants of the preferred name or any of its synonyms that are not any of these names themselves but writing variants (with or without dashes, slashes, white spaces etc.).
properties - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship
PropertyEvaluator - Class in de.julielab.neo4j.plugins.evaluators: An Evaluator that returns Evaluation.INCLUDE_AND_CONTINUE if the evaluated node has the given property key and the value is or contains (in case the value is an array) the given property value.
PropertyEvaluator(String, Object) - Constructor for class de.julielab.neo4j.plugins.evaluators.PropertyEvaluator
PUSH_TERMS_TO_SET - Static variable in class de.julielab.neo4j.plugins.ConceptManager
pushTermsToSet(GraphDatabaseService, String, Integer) - Method in class de.julielab.neo4j.plugins.ConceptManager
PushTermsToSetCommand - Class in de.julielab.neo4j.plugins.datarepresentation: A convenience class for the usage of the "push all terms to set" endpoint of the FacetConceptManager.
PushTermsToSetCommand(String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand
PushTermsToSetCommand() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand
PushTermsToSetCommand.TermSelectionDefinition - Class in de.julielab.neo4j.plugins.datarepresentation
put(ConceptCoordinates, Node) - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.CoordinatesMap

Q

qualifiers - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept

R

RELATIONSHIPS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format.
relationships - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
removeGeneralLabel(String...) - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept
RET_KEY_CHILDREN - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_NUM_AGGREGATES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_NUM_CREATED_RELS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_NUM_CREATED_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_NUM_ELEMENTS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_NUM_PROPERTIES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_PATHS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_RELTYPES - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RET_KEY_TERMS - Static variable in class de.julielab.neo4j.plugins.ConceptManager
RS_PROPS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.
RS_TARGET_ORG_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.
RS_TARGET_ORG_SRC - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.
RS_TARGET_SRC - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.
RS_TARGET_SRC_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.
RS_TYPE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants: Field in the input data format for explicit term relations.

S

searchFieldNames - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
SEQ_AGGREGATE_TERM - Static variable in class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
SEQ_FACET - Static variable in class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
SEQ_FACET_GROUP - Static variable in class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
SEQ_TERM - Static variable in class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
SequenceConstants - Class in de.julielab.neo4j.plugins.constants.semedico
SequenceConstants() - Constructor for class de.julielab.neo4j.plugins.constants.semedico.SequenceConstants
SequenceManager - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
SequenceManager() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.SequenceManager
SET_INDEX_NAME - Static variable in class de.julielab.neo4j.plugins.constants.semedico.ConceptConstants
setName - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand: The term label defining the set to push terms in.
shortName - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
SOURCE - Static variable in class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants
source - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
source - Variable in class de.julielab.neo4j.plugins.datarepresentation.TermCoordinates: Deprecated.
SOURCE_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants: Field in the input data format.
sourceId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
sourceName - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
sourceType - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
SRC_TYPE_FACET_AGGREGATION - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
SRC_TYPE_FLAT - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
SRC_TYPE_HIERARCHICAL - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
SRC_TYPE_STRINGS - Static variable in class de.julielab.neo4j.plugins.constants.semedico.FacetConstants
SUFFIX_DIVERGENT_ELEMENT_ROPERTY - Static variable in class de.julielab.neo4j.plugins.constants.semedico.AggregateConstants
synonyms - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept

T

targetOrgSource - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship: Deprecated.
used ConceptCoordinates
targetOrgSrcId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship: Deprecated.
used ConceptCoordinates
targetSource - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship: Deprecated.
used ConceptCoordinates
targetSrcId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship: Deprecated.
used ConceptCoordinates
TERM - Static variable in class de.julielab.neo4j.plugins.constants.semedico.NodeIDPrefixConstants
TERM_ID_MAPPING - Static variable in class de.julielab.neo4j.plugins.Export
TERM_MANAGER_ENDPOINT - Static variable in class de.julielab.neo4j.plugins.ConceptManager: The REST context path to this plugin.
TERM_TO_FACET - Static variable in class de.julielab.neo4j.plugins.Export
TermAggregateBuilder - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
TermAggregateBuilder() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder
TermAggregateBuilder.CopyAggregatePropertiesStatistics - Class in de.julielab.neo4j.plugins.auxiliaries.semedico
TermCoordinates - Class in de.julielab.neo4j.plugins.datarepresentation: Deprecated.
Use ConceptCoordinates instead
TermCoordinates(String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.TermCoordinates: Deprecated.
termLabel - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
TermNameAndSynonymComparator - Class in de.julielab.neo4j.plugins.auxiliaries.semedico: This comparator can be used to sort nodes according to their similarity in preferred name and synonyms.
TermNameAndSynonymComparator() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.TermNameAndSynonymComparator
termPropertyKey - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
termPropertyValue - Variable in class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
terms - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
TermSelectionDefinition(String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
TermSelectionDefinition(String, String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
TermSelectionDefinition(String, String, String, String) - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
TermSelectionDefinition() - Constructor for class de.julielab.neo4j.plugins.datarepresentation.PushTermsToSetCommand.TermSelectionDefinition
TermVariantComparator - Class in de.julielab.neo4j.plugins.auxiliaries.semedico: This comparator aims to judge whether two term writing variants are the same or not.
TermVariantComparator() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.TermVariantComparator
time - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptInsertionResponse
toJson(Object) - Static method in class de.julielab.neo4j.plugins.datarepresentation.JsonSerializer
toNeo4jRestRequest() - Method in class de.julielab.neo4j.plugins.datarepresentation.ImportConceptAndFacet
toString() - Method in class de.julielab.neo4j.plugins.auxiliaries.semedico.TermAggregateBuilder.CopyAggregatePropertiesStatistics
toString() - Method in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
type - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetGroup
type - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacetTermRelationship

U

UNIQUE_SOURCE_ID - Static variable in class de.julielab.neo4j.plugins.constants.semedico.CoordinateConstants
uniqueLabels - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportFacet
UniqueLabelsManager - Class in de.julielab.neo4j.plugins.auxiliaries.semedico: Deprecated.
This is done via a unique constraint on the respective labels since Neo4j 2.0.
UniqueLabelsManager() - Constructor for class de.julielab.neo4j.plugins.auxiliaries.semedico.UniqueLabelsManager: Deprecated.
uniqueSourceId - Variable in class de.julielab.neo4j.plugins.datarepresentation.ConceptCoordinates
UPDATE_CHILDREN_INFORMATION - Static variable in class de.julielab.neo4j.plugins.ConceptManager
updateChildrenInformation(GraphDatabaseService) - Method in class de.julielab.neo4j.plugins.ConceptManager

V

valueOf(String) - Static method in enum de.julielab.neo4j.plugins.ConceptManager.EdgeTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.ConceptManager.MorphoLabel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.ConceptManager.TermLabel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.constants.semedico.ConceptConstants.IdType: Deprecated.

Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.constants.semedico.NodeConstants.Labels: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.datarepresentation.AddToNonFacetGroupCommand.ParentCriterium: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.datarepresentation.CoordinateType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.FacetManager.EdgeTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum de.julielab.neo4j.plugins.FacetManager.FacetLabel: Returns the enum constant of this type with the specified name.
values() - Static method in enum de.julielab.neo4j.plugins.ConceptManager.EdgeTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.ConceptManager.MorphoLabel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.ConceptManager.TermLabel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.constants.semedico.ConceptConstants.IdType: Deprecated.

Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.constants.semedico.NodeConstants.Labels: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.datarepresentation.AddToNonFacetGroupCommand.ParentCriterium: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.datarepresentation.CoordinateType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.FacetManager.EdgeTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum de.julielab.neo4j.plugins.FacetManager.FacetLabel: Returns an array containing the constants of this enum type, in the order they are declared.

W

writingVariants - Variable in class de.julielab.neo4j.plugins.datarepresentation.ImportConcept

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