ConceptConstants (JULIE Lab Neo4j Concept Management Plugin 1.7.3 API)

java.lang.Object
- de.julielab.neo4j.plugins.constants.NodeConstants
- - de.julielab.neo4j.plugins.constants.semedico.NodeConstants
  - - de.julielab.neo4j.plugins.constants.semedico.ConceptConstants

public class ConceptConstants
extends NodeConstants

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class ConceptConstants.IdType
Deprecated.
should be merged with ConceptCoordinates enum
- Nested classes/interfaces inherited from class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
  NodeConstants.Labels

Nested Classes
Modifier and Type	Class and Description
`static class`	`ConceptConstants.IdType` Deprecated. should be merged with ConceptCoordinates enum

Field Summary

Fields
Modifier and Type	Field and Description
`static String`	`AGGREGATE` Field in the input data format.
`static String`	`AGGREGATE_INCLUDE_IN_HIERARCHY` Applies to aggregate terms which are explicitly imported.
`static String`	`AGGREGATE_SOURCES` Deprecated.
`static String`	`COORD_ID` Deprecated. Use default properties on `ConceptCoordinates` instead
`static String`	`COORD_SOURCE` Deprecated. Use default properties on `ConceptCoordinates` instead
`static String`	`ELEMENT_COORDINATES` Field in the input data format of aggregate terms.
`static String`	`ELEMENT_SOURCES` Deprecated. use `ELEMENT_COORDINATES` instead
`static String`	`ELEMENT_SRC_IDS` Deprecated. use `ELEMENT_COORDINATES` instead
`static String`	`INDEX_NAME`
`static String`	`PARENT_COORDINATES` Field in the input data format.
`static String`	`PROP_CHILDREN_IN_FACETS` Property that stores for database terms, which facets define children for them.
`static String`	`PROP_COORDINATES`
`static String`	`PROP_COPY_PROPERTIES` Property of aggregate terms.
`static String`	`PROP_DESCRIPTIONS`
`static String`	`PROP_DISPLAY_NAME` The name which should be displayed in Semedico, e.g.
`static String`	`PROP_EVENT_VALENCE` Deprecated.
`static String`	`PROP_FACETS`
`static String`	`PROP_MAPPING_TYPE` Property for aggregates.
`static String`	`PROP_OBSOLETE` Boolean property to indicate whether the facet was marked obsolete.
`static String`	`PROP_ORG_ID`
`static String`	`PROP_ORG_SRC`
`static String`	`PROP_PREF_NAME` The name by which a term should be references preferably.
`static String`	`PROP_SOURCES`
`static String`	`PROP_SPECIFIC_EVENT_TYPE` Deprecated.
`static String`	`PROP_SRC_IDS`
`static String`	`PROP_SYNONYMS` Name other than the preferred name that mean the same thing.
`static String`	`PROP_UNIQUE_SRC_ID`
`static String`	`PROP_WRITING_VARIANTS` Writing variants of the preferred name or any of its synonyms that are not any of these names themselves but writing variants (with or without dashes, slashes, white spaces etc.).
`static String`	`RELATIONSHIPS` Field in the input data format.
`static String`	`RS_PROPS` Field in the input data format for explicit term relations.
`static String`	`RS_TARGET_ORG_ID` Field in the input data format for explicit term relations.
`static String`	`RS_TARGET_ORG_SRC` Field in the input data format for explicit term relations.
`static String`	`RS_TARGET_SRC` Field in the input data format for explicit term relations.
`static String`	`RS_TARGET_SRC_ID` Field in the input data format for explicit term relations.
`static String`	`RS_TYPE` Field in the input data format for explicit term relations.
`static String`	`SET_INDEX_NAME`

Fields inherited from class de.julielab.neo4j.plugins.constants.semedico.NodeConstants
INDEX_ROOT_NODES, PROP_GENERAL_LABELS, PROP_ID, PROP_NAME, PROP_PROPERTIES, PROP_QUALIFIERS, PROP_UNIQUE_LABELS, PROP_VALUE

Fields inherited from class de.julielab.neo4j.plugins.constants.NodeConstants
KEY_LABELS

Constructor Summary

Constructors
Constructor and Description

ConceptConstants()

Constructors
Constructor and Description
`ConceptConstants()`

Method Summary
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - PROP_PREF_NAME
```
public static final String PROP_PREF_NAME
```
    The name by which a term should be references preferably. This will be the standard name in the literature or the most conventionalized name or similar.
    
    See Also:
    
    Constant Field Values
  - PROP_DISPLAY_NAME
```
public static final String PROP_DISPLAY_NAME
```
    The name which should be displayed in Semedico, e.g. for context disambiguation. This is used for genes, for example, where the organism is appended to the preferred name in order to distinguish between genes with the same symbol in different organisms.
    
    See Also:
    
    Constant Field Values
  - PROP_SYNONYMS
```
public static final String PROP_SYNONYMS
```
    Name other than the preferred name that mean the same thing.
    
    See Also:
    
    Constant Field Values
  - PROP_WRITING_VARIANTS
```
public static final String PROP_WRITING_VARIANTS
```
    Writing variants of the preferred name or any of its synonyms that are not any of these names themselves but writing variants (with or without dashes, slashes, white spaces etc.).
    
    See Also:
    
    Constant Field Values
  - PROP_DESCRIPTIONS
```
public static final String PROP_DESCRIPTIONS
```
    See Also:
    
    Constant Field Values
  - PROP_FACETS
```
public static final String PROP_FACETS
```
    See Also:
    
    Constant Field Values
  - PROP_ORG_ID
```
public static final String PROP_ORG_ID
```
    See Also:
    
    Constant Field Values
  - PROP_ORG_SRC
```
public static final String PROP_ORG_SRC
```
    See Also:
    
    Constant Field Values
  - PROP_SRC_IDS
```
public static final String PROP_SRC_IDS
```
    See Also:
    
    Constant Field Values
  - PROP_SOURCES
```
public static final String PROP_SOURCES
```
    See Also:
    
    Constant Field Values
  - PROP_UNIQUE_SRC_ID
```
public static final String PROP_UNIQUE_SRC_ID
```
    See Also:
    
    Constant Field Values
  - PROP_CHILDREN_IN_FACETS
```
public static final String PROP_CHILDREN_IN_FACETS
```
    Property that stores for database terms, which facets define children for them. This is necessary because one facet can just be a 'view' of another facet, thus removing some of the original terms for a narrower focus. Then it could be that in one facet a particular term has less children that in another - e.g. the original - facet.
    
    See Also:
    
    Constant Field Values
  - PARENT_COORDINATES
```
public static final String PARENT_COORDINATES
```
    Field in the input data format. Specifies for each - or for none - of the parent source IDs given with #PARENT_SRC_IDS the respective source. This information is used to identify the correct parent node.
    
    See Also:
    
    Constant Field Values
  - INDEX_NAME
```
public static final String INDEX_NAME
```
    See Also:
    
    Constant Field Values
  - SET_INDEX_NAME
```
public static final String SET_INDEX_NAME
```
    See Also:
    
    Constant Field Values
  - RELATIONSHIPS
```
public static final String RELATIONSHIPS
```
    Field in the input data format.
    
    See Also:
    
    Constant Field Values
  - RS_TARGET_SRC_ID
```
public static final String RS_TARGET_SRC_ID
```
    Field in the input data format for explicit term relations. Source ID of the term that is the target of a relationship.
    
    See Also:
    
    Constant Field Values
  - RS_TARGET_SRC
```
public static final String RS_TARGET_SRC
```
    Field in the input data format for explicit term relations. The source of the target term the relation points to.
    
    See Also:
    
    Constant Field Values
  - RS_TARGET_ORG_ID
```
public static final String RS_TARGET_ORG_ID
```
    Field in the input data format for explicit term relations. Original source ID of the term that is the target of a relationship.
    
    See Also:
    
    Constant Field Values
  - RS_TARGET_ORG_SRC
```
public static final String RS_TARGET_ORG_SRC
```
    Field in the input data format for explicit term relations. The original source of the target term the relation points to.
    
    See Also:
    
    Constant Field Values
  - RS_TYPE
```
public static final String RS_TYPE
```
    Field in the input data format for explicit term relations. Specifies the type of the relationship.
    
    See Also:
    
    Constant Field Values
  - RS_PROPS
```
public static final String RS_PROPS
```
    Field in the input data format for explicit term relations. Specifies a number of properties to add to the relationship.
    
    See Also:
    
    Constant Field Values
  - AGGREGATE
```
public static final String AGGREGATE
```
    Field in the input data format. Indicates whether a term is actually an aggregate term, representing a whole set of real terms. This could be done for terms with equal names to create a single representative with all necessary information to come back to the original terms, for instance.
    
    See Also:
    
    Constant Field Values
  - AGGREGATE_SOURCES
```
@Deprecated
public static final String AGGREGATE_SOURCES
```
    Deprecated.
    
    Field in the input data format. Indicates for aggregate terms (i.e. import data objects where the property AGGREGATE is set to true) which term sources (NOT original source) are eligible as elements for this aggregate.
    
    See Also:
    
    Constant Field Values
  - AGGREGATE_INCLUDE_IN_HIERARCHY
```
public static final String AGGREGATE_INCLUDE_IN_HIERARCHY
```
    Applies to aggregate terms which are explicitly imported. If set to true, they may be nodes embedded into a hierarchy and thus be 'broader than' other terms and be root terms of facets.
    
    See Also:
    
    Constant Field Values
  - ELEMENT_SRC_IDS
```
@Deprecated
public static final String ELEMENT_SRC_IDS
```
    Deprecated. use ELEMENT_COORDINATES instead
    
    Field in the input data format of aggregate terms. Specifies the source ID of the elements aggregated by this aggregate node.
    
    See Also:
    
    Constant Field Values
  - ELEMENT_SOURCES
```
@Deprecated
public static final String ELEMENT_SOURCES
```
    Deprecated. use ELEMENT_COORDINATES instead
    
    Field in the input data format of aggregate terms. Specifies for each - or none - of the elements their respective source. Null values are allowed but for each source ID there must be one source or none at all.
    
    See Also:
    
    Constant Field Values
  - ELEMENT_COORDINATES
```
public static final String ELEMENT_COORDINATES
```
    Field in the input data format of aggregate terms. Specifies the term source coordinates - source ID and source - of element terms.
    
    See Also:
    
    Constant Field Values
  - PROP_COPY_PROPERTIES
```
public static final String PROP_COPY_PROPERTIES
```
    Property of aggregate terms. Specifies an array of property names to be copied from element terms.
    
    See Also:
    
    Constant Field Values
  - PROP_SPECIFIC_EVENT_TYPE
```
@Deprecated
public static final String PROP_SPECIFIC_EVENT_TYPE
```
    Deprecated.
    
    Property disposing for which specificType - e.g. phosphorylation or regulation - the respective term is an event term. This property is exactly the specificType that is stored in the UIMA EventMention, created by JReX for example.
    
    See Also:
    
    Constant Field Values
  - PROP_EVENT_VALENCE
```
@Deprecated
public static final String PROP_EVENT_VALENCE
```
    Deprecated.
    
    Property determining how many arguments the event, this term is representing, can take. This is an array property, allowing multiple values since, for example, an event can be unary and binary, depending on the textual context.
    
    See Also:
    
    Constant Field Values
  - PROP_MAPPING_TYPE
```
public static final String PROP_MAPPING_TYPE
```
    Property for aggregates. The value of the property exposes information about the exact set of mapping types allowed to create the aggregate.
    
    See Also:
    
    Constant Field Values
  - COORD_ID
```
@Deprecated
public static final String COORD_ID
```
    Deprecated. Use default properties on ConceptCoordinates instead
    
    Property of a term coordinates object. Denotes the ID coordinate.
    
    See Also:
    
    Constant Field Values
  - COORD_SOURCE
```
@Deprecated
public static final String COORD_SOURCE
```
    Deprecated. Use default properties on ConceptCoordinates instead
    
    Property of a term coordinates object. Denotes the source coordinate.
    
    See Also:
    
    Constant Field Values
  - PROP_COORDINATES
```
public static final String PROP_COORDINATES
```
    See Also:
    
    Constant Field Values
  - PROP_OBSOLETE
```
public static final String PROP_OBSOLETE
```
    Boolean property to indicate whether the facet was marked obsolete. If the property is missing on facet, the convention is that the facet is not obsolete.
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - ConceptConstants
```
public ConceptConstants()
```

Class ConceptConstants

Nested Class Summary

Nested classes/interfaces inherited from class de.julielab.neo4j.plugins.constants.semedico.NodeConstants

Field Summary

Fields inherited from class de.julielab.neo4j.plugins.constants.semedico.NodeConstants

Fields inherited from class de.julielab.neo4j.plugins.constants.NodeConstants

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

PROP_PREF_NAME

PROP_DISPLAY_NAME

PROP_SYNONYMS

PROP_WRITING_VARIANTS

PROP_DESCRIPTIONS

PROP_FACETS

PROP_ORG_ID

PROP_ORG_SRC

PROP_SRC_IDS

PROP_SOURCES

PROP_UNIQUE_SRC_ID

PROP_CHILDREN_IN_FACETS

PARENT_COORDINATES

INDEX_NAME

SET_INDEX_NAME

RELATIONSHIPS

RS_TARGET_SRC_ID

RS_TARGET_SRC

RS_TARGET_ORG_ID

RS_TARGET_ORG_SRC

RS_TYPE

RS_PROPS

AGGREGATE

AGGREGATE_SOURCES

AGGREGATE_INCLUDE_IN_HIERARCHY

ELEMENT_SRC_IDS

ELEMENT_SOURCES

ELEMENT_COORDINATES

PROP_COPY_PROPERTIES

PROP_SPECIFIC_EVENT_TYPE

PROP_EVENT_VALENCE

PROP_MAPPING_TYPE

COORD_ID

COORD_SOURCE

PROP_COORDINATES

PROP_OBSOLETE

Constructor Detail

ConceptConstants