Package de.julielab.concepts.db.creators

Class HgncGroupsConceptCreator

java.lang.Object

de.julielab.concepts.db.creators.HgncGroupsConceptCreator

All Implemented Interfaces:

ConceptCreator, de.julielab.jssf.commons.spi.ExtensionPoint, de.julielab.jssf.commons.spi.ParameterExposing

public class HgncGroupsConceptCreator
extends Object
implements ConceptCreator

Field Summary

Fields

Modifier and Type	Field	Description
static String	FAMILYALIASFILE
static String	FAMILYFILE
static String	GENETOGROUPMAP
static String	HGNC_GROUP_LABEL
static String	HGNC_SOURCE
static String	HIERARCHYFILE

Constructor Summary

Constructors

Constructor	Description
HgncGroupsConceptCreator()

Method Summary

Modifier and Type	Method	Description
Stream<de.julielab.neo4j.plugins.datarepresentation.ImportConcepts>	createConcepts(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> importConfig)
void	exposeParameters(String basePath, org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> template)
String	getName()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.julielab.jssf.commons.spi.ExtensionPoint

hasName

Field Detail

FAMILYFILE

public static final String FAMILYFILE

See Also:

Constant Field Values

FAMILYALIASFILE

public static final String FAMILYALIASFILE

See Also:

Constant Field Values

HIERARCHYFILE

public static final String HIERARCHYFILE

See Also:

Constant Field Values

GENETOGROUPMAP

public static final String GENETOGROUPMAP

See Also:

Constant Field Values

HGNC_SOURCE

public static final String HGNC_SOURCE

See Also:

Constant Field Values

HGNC_GROUP_LABEL

public static final String HGNC_GROUP_LABEL

See Also:

Constant Field Values

Constructor Detail

HgncGroupsConceptCreator

public HgncGroupsConceptCreator()

Method Detail

createConcepts

public Stream<de.julielab.neo4j.plugins.datarepresentation.ImportConcepts> createConcepts(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> importConfig)
                                                                                   throws ConceptCreationException,
                                                                                          FacetCreationException

Specified by:

createConcepts in interface ConceptCreator

Throws:

ConceptCreationException

FacetCreationException

getName

public String getName()

Specified by:

getName in interface de.julielab.jssf.commons.spi.ExtensionPoint

exposeParameters

public void exposeParameters(String basePath,
                             org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> template)

Specified by:

exposeParameters in interface de.julielab.jssf.commons.spi.ParameterExposing