Package de.julielab.concepts.db.creators

Class JulielabBioPortalToolsConceptCreator

java.lang.Object

de.julielab.concepts.db.creators.JulielabBioPortalToolsConceptCreator

All Implemented Interfaces:

ConceptCreator, de.julielab.jssf.commons.spi.ExtensionPoint, de.julielab.jssf.commons.spi.ParameterExposing

public class JulielabBioPortalToolsConceptCreator
extends Object
implements ConceptCreator

Creates ImportConcept instances from the ontology class output created by the julielab-bioportal-ontology-tools.

This class reads a specific JSON format as it is generated by the julielab-bioportal-ontology-tools. The JSON format is centered around the human-readable names of ontology classes and their taxonomical structure. For more information, refer to the link given below.

Author:

faessler

See Also:

https://github.com/JULIELab/julielab-bioportal-ontology-tools

Constructor Summary

Constructors

Constructor	Description
JulielabBioPortalToolsConceptCreator()

Method Summary

Modifier and Type	Method	Description
Stream<de.julielab.neo4j.plugins.datarepresentation.ImportConcepts>	createConcepts(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
void	exposeParameters(String basePath, org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> template)
String	getName()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.julielab.jssf.commons.spi.ExtensionPoint

hasName

Constructor Detail

JulielabBioPortalToolsConceptCreator

public JulielabBioPortalToolsConceptCreator()

Method Detail

createConcepts

public Stream<de.julielab.neo4j.plugins.datarepresentation.ImportConcepts> createConcepts(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> config)
                                                                                   throws ConceptCreationException

Specified by:

createConcepts in interface ConceptCreator

Throws:

ConceptCreationException

exposeParameters

public void exposeParameters(String basePath,
                             org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> template)

Specified by:

exposeParameters in interface de.julielab.jssf.commons.spi.ParameterExposing

getName

public String getName()

Specified by:

getName in interface de.julielab.jssf.commons.spi.ExtensionPoint