A C D G H I J L M N P R S T

A

addFeature(Feature) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

addToFSArray(FSArray, FeatureStructure) - Static method in class de.julielab.jcore.utility.JCoReTools

Adds an Element of type FeatrueStructrue to a FSArray and resizes the FSArray if necessary

addToFSArray(FSArray, FeatureStructure, int) - Static method in class de.julielab.jcore.utility.JCoReTools

Adds an Element of type FeatrueStructrue to a FSArray and resizes the FSArray if necessary, adding additionSize new elements to the array (only if necessary!)

addToFSArray(FSArray, Collection<? extends FeatureStructure>) - Static method in class de.julielab.jcore.utility.JCoReTools

Adds all elements in newElements to array resizes the FSArray if necessary.

addToStringArray(StringArray, String, JCas) - Static method in class de.julielab.jcore.utility.JCoReTools

addToStringArray(StringArray, String[], JCas) - Static method in class de.julielab.jcore.utility.JCoReTools

C

clearReplacementCache() - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Important only if using value replacements.

copy() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

copyFSArray(FSArray) - Static method in class de.julielab.jcore.utility.JCoReTools

D

de.julielab.jcore.utility - package de.julielab.jcore.utility

DEFAULT_ADDITION_SIZE - Static variable in class de.julielab.jcore.utility.JCoReTools

Number of elements to be added if FSArray object is resized

G

get() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

getAnnotationAtMatchingOffsets(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

getAnnotationAtOffset(JCas, String, int, int) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

returns an annotation of the type fullEntityClassName which has exactly the specified offset

getAnnotationByClassName(JCas, String) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

returns an annotation object (de.julielab.jcore.types.annotation) of the type specified by fullEntityClassName.

getArrayElement(CommonArrayFS, Map<?, ?>, Method, Method, int) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getBooleanValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getByteValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getCollectionReader(String) - Static method in class de.julielab.jcore.utility.JCoReTools

getDefaultReplacementValue() - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getDoubleValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getFeature(int) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getFeaturePath() - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getFeatureValueFromFeatureStructure(FeatureStructure, Feature, Map<?, ?>) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Returns the value of the feature feature of the feature structure fs.

getFloatValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getFSValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getIncludedAnnotations(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns, in ascending order, all annotations of type cls that are completely included - perhaps with having the same begin and/or end as the focusAnnotation - in focusAnnotation.

getIncludingAnnotation(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns the leftmost annotation of type cls that completely includes focusAnnotation.

getIntValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getLastOverlappingAnnotation(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns the annotation with the highest end offset of type cls overlapping focusAnnotation.

getLongValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getNearestIncludingAnnotation(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns the nearest annotation of class cls to focusAnnotation, i.e. the one (or just one, if multiple exist) with the highest start-offset that completely overlaps focusAnnotation.

getNearestOverlappingAnnotations(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns the nearest annotations of class cls to focusAnnotation, i.e. all annotations overlapping focusAnnotation where between the leftest returned annotation and the next returned annotation (that is, returned offsets 0 and 1, if there are multiple returned annotations) there is no other annotation of type cls.

getObjectValueAsString(Object) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Get a String representation for a single primitive value.

getOverlappingAnnotation(JCas, String, int, int) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

returns an annotation of the type fullEntityClassName which overlaps an or is overlapped by an annotation of the same type at the given offset

getPartiallyOverlappingAnnotation(JCas, String, int, int) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

returns an annotation of the type fullEntityClassName which partially overlaps an or is overlapped by an annotation of the same type at the given offset

getPartiallyOverlappingAnnotation(JCas, Annotation, Class<T>) - Static method in class de.julielab.jcore.utility.JCoReAnnotationTools

Returns the leftmost annotation of type cls that overlaps focusAnnotation.

getPubmedId(JCas) - Static method in class de.julielab.jcore.utility.JCoReTools

Returns the PubMed ID of the document in the JCas.

getReplaceUnmappedValues() - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Returns true if feature values not contained in the replacement map are to be replaced by a default value.

getShortValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getStringValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getTypClass(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getType(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getValue(FeatureStructure, int) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Begins to traverse the feature path from position startFeatureIndex and returns whatever values lie at the end of the feature path.

getValueAsString(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getValueAsString(FeatureStructure, boolean) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

If using replacements, please note the comment at JCoReFeaturePath.clearReplacementCache().

getValueAsStringArray(FeatureStructure, boolean) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getValueAsStringArray(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Returns the feature path values without performing value replacements.

getValueAsStringList(FeatureStructure, boolean) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

getValueAsStringList(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Returns the feature path values without performing value replacements.

H

hasNext() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

I

initialize(String) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

initialize(String, Map<?, ?>) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

isValid() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

J

JCoReAnnotationTools - Class in de.julielab.jcore.utility

JCoReAnnotationTools() - Constructor for class de.julielab.jcore.utility.JCoReAnnotationTools

JCoReFeaturePath - Class in de.julielab.jcore.utility

<<<<<<< HEAD A simple implementation of a feature path, originally adapted to the needs of the EntityEvaluatorConverter.

JCoReFeaturePath() - Constructor for class de.julielab.jcore.utility.JCoReFeaturePath

JCoReFSListIterator<T extends org.apache.uima.cas.FeatureStructure> - Class in de.julielab.jcore.utility

An iterator that takes a list of FeatureStructures and returns or navigates its elements exactly in the order the list defines.

JCoReFSListIterator(List<T>) - Constructor for class de.julielab.jcore.utility.JCoReFSListIterator

JCoReTools - Class in de.julielab.jcore.utility

Tool for creating new UIMA Objects and other UIMA related things

JCoReTools() - Constructor for class de.julielab.jcore.utility.JCoReTools

JCoReUtilitiesException - Exception in de.julielab.jcore.utility

JCoReUtilitiesException() - Constructor for exception de.julielab.jcore.utility.JCoReUtilitiesException

JCoReUtilitiesException(String, Throwable) - Constructor for exception de.julielab.jcore.utility.JCoReUtilitiesException

JCoReUtilitiesException(String) - Constructor for exception de.julielab.jcore.utility.JCoReUtilitiesException

JCoReUtilitiesException(Throwable) - Constructor for exception de.julielab.jcore.utility.JCoReUtilitiesException

L

ll_getValueAsString(int, LowLevelCAS) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

loadReplacementsFromFile(String) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Reads a replacement file with lines of the form originalValue=replacementValue and immediately populates the internal replacement table with those entries.

M

moveTo(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFSListIterator

moveToFirst() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

moveToLast() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

moveToNext() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

moveToPrevious() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

N

next() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

P

printFSArray(FSArray) - Static method in class de.julielab.jcore.utility.JCoReTools

Prints the content of the FSArray to System.out

R

readReplacementsFromFile(String) - Static method in class de.julielab.jcore.utility.JCoReFeaturePath

Reads a replacement file with lines of the form originalValue=replacementValue and returns the respective map.

readReplacementsFromInputStream(InputStream) - Static method in class de.julielab.jcore.utility.JCoReFeaturePath

Reads a replacement file with lines of the form originalValue=replacementValue and returns the respective map.

remove() - Method in class de.julielab.jcore.utility.JCoReFSListIterator

replaceValue(FeatureStructure) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

When using this method, please note the comment at JCoReFeaturePath.clearReplacementCache().

S

setDefaultReplacementValue(Object) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

Sets a default replacement value to be used when there is no replacement for a feature value and JCoReFeaturePath.replaceUnmappedValues is set to true.

setReplaceUnmappedValues(boolean) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

For the work with replacements, please note the comment of JCoReFeaturePath.clearReplacementCache().

size() - Method in class de.julielab.jcore.utility.JCoReFeaturePath

T

typeInit(Type) - Method in class de.julielab.jcore.utility.JCoReFeaturePath

A C D G H I J L M N P R S T