Package de.julielab.jcore.reader.pubtator

Class PubtatorReader

  • All Implemented Interfaces:
    org.apache.uima.collection.base_cpm.BaseCollectionReader, org.apache.uima.collection.CollectionReader, org.apache.uima.resource.ConfigurableResource, org.apache.uima.resource.Resource
    public class PubtatorReader
extends org.apache.uima.collection.CollectionReader_ImplBase

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static String PARAM_ADD_ENTITIES  
      static String PARAM_INPUT  

      • Fields inherited from interface org.apache.uima.resource.Resource

        PARAM_AGGREGATE_SOFA_MAPPINGS, PARAM_CONFIG_MANAGER, PARAM_CONFIG_PARAM_SETTINGS, PARAM_EXTERNAL_OVERRIDE_SETTINGS, PARAM_PERFORMANCE_TUNING_SETTINGS, PARAM_RESOURCE_MANAGER, PARAM_UIMA_CONTEXT

    • Constructor Summary

      Constructors 
      Constructor Description
      PubtatorReader()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void close()  
      void getNext​(org.apache.uima.cas.CAS aCAS)  
      org.apache.uima.util.Progress[] getProgress()  
      boolean hasNext()  
      void initialize()  

      • Methods inherited from class org.apache.uima.collection.CollectionReader_ImplBase

        destroy, getCasInitializer, getProcessingResourceMetaData, initialize, isConsuming, reconfigure, setCasInitializer, typeSystemInit

      • Methods inherited from class org.apache.uima.resource.ConfigurableResource_ImplBase

        getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

      • Methods inherited from class org.apache.uima.resource.Resource_ImplBase

        getCasManager, getLogger, getMetaData, getRelativePathResolver, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger, setMetaData

      • Methods inherited from interface org.apache.uima.resource.ConfigurableResource

        getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

      • Methods inherited from interface org.apache.uima.resource.Resource

        getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger

    • Constructor Detail

      • PubtatorReader

        public PubtatorReader()

    • Method Detail

      • initialize

        public void initialize()
                throws org.apache.uima.resource.ResourceInitializationException
        Overrides:
        initialize in class org.apache.uima.collection.CollectionReader_ImplBase
        Throws:
        org.apache.uima.resource.ResourceInitializationException

      • getNext

        public void getNext​(org.apache.uima.cas.CAS aCAS)
             throws IOException,
                    org.apache.uima.collection.CollectionException
        Throws:
        IOException
        org.apache.uima.collection.CollectionException

      • hasNext

        public boolean hasNext()
                throws IOException,
                       org.apache.uima.collection.CollectionException
        Throws:
        IOException
        org.apache.uima.collection.CollectionException

      • getProgress

        public org.apache.uima.util.Progress[] getProgress()