de.julielab.jcore.reader.muc7

Class MUC7Reader

java.lang.Object

org.apache.uima.resource.Resource_ImplBase

org.apache.uima.resource.ConfigurableResource_ImplBase

org.apache.uima.collection.CollectionReader_ImplBase

de.julielab.jcore.reader.muc7.MUC7Reader

All Implemented Interfaces:

org.apache.uima.collection.base_cpm.BaseCollectionReader, org.apache.uima.collection.CollectionReader, org.apache.uima.resource.ConfigurableResource, org.apache.uima.resource.Resource

public class MUC7Reader
extends org.apache.uima.collection.CollectionReader_ImplBase

Field Summary

Fields

Modifier and Type	Field and Description
static String[]	ELEMENT_TEXT_TO_BE_PROCESSED XML elements comprised in an object list
static String	PARAM_INPUTDIR Name of configuration parameter that must be set to the path of a directory containing input files.

Fields inherited from interface org.apache.uima.resource.Resource

PARAM_AGGREGATE_SOFA_MAPPINGS, PARAM_CONFIG_MANAGER, PARAM_CONFIG_PARAM_SETTINGS, PARAM_EXTERNAL_OVERRIDE_SETTINGS, PARAM_PERFORMANCE_TUNING_SETTINGS, PARAM_RESOURCE_MANAGER, PARAM_UIMA_CONTEXT

Constructor Summary

Constructors

Constructor and Description
MUC7Reader()

Method Summary

Methods

Modifier and Type	Method and Description
void	close()
int[]	getBeginEndOfSequence(String sequenceString, String inputString, int startOfSequence) Given a sequence, a string in which the token occurs and a stating point, this methods retrieves begin and end position of this sequence.
int[]	getBeginEndOfToken(String tokenString, String inputString, int startOfToken) Given a token, a string in which the token occurs and a stating point, this methods retrieves begin and end position of this token.
void	getNext(org.apache.uima.cas.CAS cas)
org.apache.uima.util.Progress[]	getProgress()
boolean	hasNext()
void	initialize()
String	normalizeString(String stringToBeNormalized) normalizes a string by replacing newlines by whitspaces, by removing sequences of more that one whitespace and by removing the newlines at the beginning of a line; also removes stuff like "A;N;D;R;LR;" etc.

Methods inherited from class org.apache.uima.collection.CollectionReader_ImplBase

destroy, getCasInitializer, getProcessingResourceMetaData, initialize, isConsuming, reconfigure, setCasInitializer, typeSystemInit

Methods inherited from class org.apache.uima.resource.ConfigurableResource_ImplBase

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from class org.apache.uima.resource.Resource_ImplBase

getCasManager, getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger, setMetaData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.apache.uima.resource.ConfigurableResource

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from interface org.apache.uima.resource.Resource

getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger

Field Detail

ELEMENT_TEXT_TO_BE_PROCESSED

public static final String[] ELEMENT_TEXT_TO_BE_PROCESSED

XML elements comprised in an object list

PARAM_INPUTDIR

public static final String PARAM_INPUTDIR

Name of configuration parameter that must be set to the path of a directory containing input files.

See Also:

Constant Field Values

Constructor Detail

MUC7Reader

public MUC7Reader()

Method Detail

getBeginEndOfToken

public int[] getBeginEndOfToken(String tokenString,
                       String inputString,
                       int startOfToken)

Given a token, a string in which the token occurs and a stating point, this methods retrieves begin and end position of this token.

Parameters:

tokenString - (the token to be searched)

inputString - (the string in which we search the token)

startOfToken - (the begin where the token should be searched in the inputString)

Returns:

the begin and the end position of the token in an int array {begin, end}

getBeginEndOfSequence

public int[] getBeginEndOfSequence(String sequenceString,
                          String inputString,
                          int startOfSequence)

Given a sequence, a string in which the token occurs and a stating point, this methods retrieves begin and end position of this sequence.

Parameters:

sequenceString - (the sequence to be searched)

inputString - (the string in which we search de sequence)

startOfSequence - (the begin were the sequence shpuld be searched in the inputString)

Returns:

the begin and the end position of the sequence in an int array {begin, end}

normalizeString

public String normalizeString(String stringToBeNormalized)

normalizes a string by replacing newlines by whitspaces, by removing sequences of more that one whitespace and by removing the newlines at the beginning of a line; also removes stuff like "A;N;D;R;LR;" etc.

Parameters:

stringToBeNormalized -

Returns:

the normalized string

initialize

public void initialize()
                throws org.apache.uima.resource.ResourceInitializationException

Overrides:

initialize in class org.apache.uima.collection.CollectionReader_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

getNext

public void getNext(org.apache.uima.cas.CAS cas)
             throws IOException,
                    org.apache.uima.collection.CollectionException

Throws:

IOException

org.apache.uima.collection.CollectionException

close

public void close()
           throws IOException

Throws:

IOException

getProgress

public org.apache.uima.util.Progress[] getProgress()

hasNext

public boolean hasNext()
                throws IOException,
                       org.apache.uima.collection.CollectionException

Throws:

IOException

org.apache.uima.collection.CollectionException