MedNormAnnotator (JCoRe MedXN 2.5.0 API)

java.lang.Object
- org.apache.uima.analysis_component.AnalysisComponent_ImplBase
- - org.apache.uima.analysis_component.Annotator_ImplBase
  - - org.apache.uima.analysis_component.JCasAnnotator_ImplBase
    - - org.ohnlp.ae.medxn.MedNormAnnotator

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent
```
public class MedNormAnnotator
extends org.apache.uima.analysis_component.JCasAnnotator_ImplBase
```
Normalize medication description string same as the RxNorm standard

Author:

Sunghwan Sohn

Constructor Summary

Constructors
Constructor Description

MedNormAnnotator()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected String`	`normalizeDrug(Medication med, org.apache.uima.jcas.cas.FSArray attrs)`	Return a normalized form of RxNorm for med eg) For a given medication information "Fluoxetine [Prozac] 4 MG/ML Oral Solution" Return "fluoxetine4 mg/mloral solutionprozac"
`void`	`process(org.apache.uima.jcas.JCas jcas)`

Methods inherited from class org.apache.uima.analysis_component.JCasAnnotator_ImplBase
getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.Annotator_ImplBase
getCasInstancesRequired, hasNext, next

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase
batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, initialize, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - MedNormAnnotator
```
public MedNormAnnotator()
```
- Method Detail
  - process
```
public void process(org.apache.uima.jcas.JCas jcas)
             throws org.apache.uima.analysis_engine.AnalysisEngineProcessException
```
    Specified by:
    
    process in class org.apache.uima.analysis_component.JCasAnnotator_ImplBase
    
    Throws:
    
    org.apache.uima.analysis_engine.AnalysisEngineProcessException
  - normalizeDrug
```
protected String normalizeDrug(Medication med,
                               org.apache.uima.jcas.cas.FSArray attrs)
```
    Return a normalized form of RxNorm for med eg) For a given medication information "Fluoxetine [Prozac] 4 MG/ML Oral Solution" Return "fluoxetine4 mg/mloral solutionprozac"
    
    Parameters:
    
    med - ConceptMention medication
    
    attrs - medication attributes in FSArray
    
    Returns:
    
    normalized medication information to the RxNorm standard