Serialized Form (jcore-mallet-0.4 1.0.0 API)

Package edu.umass.cs.mallet.base.classify
- Class edu.umass.cs.mallet.base.classify.AdaBoostM2 extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - weakClassifiers
```
Classifier[] weakClassifiers
```
    - alphas
```
double[] alphas
```
- Class edu.umass.cs.mallet.base.classify.BalancedWinnow extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - m_weights
```
double[][] m_weights
```
- Class edu.umass.cs.mallet.base.classify.BalancedWinnowTrainer extends ClassifierTrainer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_epsilon
```
double m_epsilon
```
    - m_delta
```
double m_delta
```
    - m_maxIterations
```
int m_maxIterations
```
    - m_coolingRate
```
double m_coolingRate
```
    - m_weights
```
double[][] m_weights
```
      Array of weights, one for each class and feature, initialized to 1. For each class, there is an additional default "feature" weight that is set to 1 in every example (it remains constant; this is used to prevent the instance from having 0 dot product with a class).
- Class edu.umass.cs.mallet.base.classify.C45 extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - m_root
```
C45.Node m_root
```
- Class edu.umass.cs.mallet.base.classify.C45.Node extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_gainRatio
```
GainRatio m_gainRatio
```
    - m_ilist
```
InstanceList m_ilist
```
    - m_instIndices
```
int[] m_instIndices
```
    - m_dataDict
```
Alphabet m_dataDict
```
    - m_minNumInsts
```
int m_minNumInsts
```
    - m_parent
```
C45.Node m_parent
```
    - m_leftChild
```
C45.Node m_leftChild
```
    - m_rightChild
```
C45.Node m_rightChild
```
- Class edu.umass.cs.mallet.base.classify.DecisionTree extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - root
```
DecisionTree.Node root
```
    - addFeaturesClassEntropyThreshold
```
double addFeaturesClassEntropyThreshold
```
- Class edu.umass.cs.mallet.base.classify.DecisionTree.Node extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - featureIndex
```
int featureIndex
```
    - infoGain
```
double infoGain
```
    - ilist
```
InstanceList ilist
```
    - dictionary
```
Alphabet dictionary
```
    - labelEntropy
```
double labelEntropy
```
    - labeling
```
Labeling labeling
```
    - parent
```
DecisionTree.Node parent
```
    - child0
```
DecisionTree.Node child0
```
    - child1
```
DecisionTree.Node child1
```
    - name
```
String name
```
- Class edu.umass.cs.mallet.base.classify.MaxEnt extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - parameters
```
double[] parameters
```
    - defaultFeatureIndex
```
int defaultFeatureIndex
```
    - featureSelection
```
FeatureSelection featureSelection
```
    - perClassFeatureSelection
```
FeatureSelection[] perClassFeatureSelection
```
- Class edu.umass.cs.mallet.base.classify.MaxEntTrainer extends ClassifierTrainer implements Serializable
  - Serialized Fields
    - numGetValueCalls
```
int numGetValueCalls
```
    - numGetValueGradientCalls
```
int numGetValueGradientCalls
```
    - numIterations
```
int numIterations
```
    - usingMultiConditionalTraining
```
boolean usingMultiConditionalTraining
```
    - usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
    - gaussianPriorVariance
```
double gaussianPriorVariance
```
    - hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
    - hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
    - maximizerClass
```
Class<T> maximizerClass
```
- Class edu.umass.cs.mallet.base.classify.MCMaxEnt extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - parameters
```
double[] parameters
```
    - defaultFeatureIndex
```
int defaultFeatureIndex
```
    - featureSelection
```
FeatureSelection featureSelection
```
    - perClassFeatureSelection
```
FeatureSelection[] perClassFeatureSelection
```
- Class edu.umass.cs.mallet.base.classify.MCMaxEntTrainer extends ClassifierTrainer implements Serializable
  - Serialized Fields
    - numGetValueCalls
```
int numGetValueCalls
```
    - numGetValueGradientCalls
```
int numGetValueGradientCalls
```
    - numIterations
```
int numIterations
```
    - usingMultiConditionalTraining
```
boolean usingMultiConditionalTraining
```
    - usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
    - gaussianPriorVariance
```
double gaussianPriorVariance
```
    - hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
    - hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
    - maximizerClass
```
Class<T> maximizerClass
```
    - generativeWeighting
```
double generativeWeighting
```
- Class edu.umass.cs.mallet.base.classify.NaiveBayes extends Classifier implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - prior
```
Multinomial.Logged prior
```
    - p
```
Multinomial.Logged[] p
```
- Class edu.umass.cs.mallet.base.classify.NaiveBayesTrainer extends IncrementalClassifierTrainer implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - featureEstimator
```
Multinomial.Estimator featureEstimator
```
    - priorEstimator
```
Multinomial.Estimator priorEstimator
```
    - me
```
Multinomial.Estimator[] me
```
    - pe
```
Multinomial.Estimator pe
```
    - instancePipe
```
Pipe instancePipe
```
    - dataAlphabet
```
Alphabet dataAlphabet
```
    - targetAlphabet
```
Alphabet targetAlphabet
```
Package edu.umass.cs.mallet.base.classify.evaluate
- Class edu.umass.cs.mallet.base.classify.evaluate.Graph extends Canvas implements Serializable
  - Serialized Fields
    - top
```
int top
```
    - bottom
```
int bottom
```
    - left
```
int left
```
    - right
```
int right
```
    - titleHeight
```
int titleHeight
```
    - labelWidth
```
int labelWidth
```
    - fm
```
FontMetrics fm
```
    - padding
```
int padding
```
    - title
```
String title
```
    - xLabel
```
String xLabel
```
    - yLabel
```
String yLabel
```
    - xLabelHeight
```
int xLabelHeight
```
    - yLabelWidth
```
int yLabelWidth
```
    - min
```
int min
```
    - max
```
int max
```
    - xmin
```
int xmin
```
    - xmax
```
int xmax
```
    - legend
```
Graph.Legend legend
```
    - items
```
Vector<E> items
```
- Class edu.umass.cs.mallet.base.classify.evaluate.Graph2 extends Graph implements Serializable
  - Serialized Fields
    - increment
```
int increment
```
    - position
```
int position
```

Package edu.umass.cs.mallet.base.extract

Class edu.umass.cs.mallet.base.extract.BIOTokenizationFilter extends Object implements Serializable

serialVersionUID:: -8726127297313150023L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.extract.ConfidenceTokenizationFilter extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

confidenceEstimator

ExtractionConfidenceEstimator confidenceEstimator

underlyingFilter
```
TokenizationFilter underlyingFilter
```

Class edu.umass.cs.mallet.base.extract.CRFExtractor extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

crf
```
CRF4 crf
```
tokenizationPipe
```
Pipe tokenizationPipe
```
featurePipe
```
Pipe featurePipe
```
backgroundTag
```
String backgroundTag
```
filter
```
TokenizationFilter filter
```

Class edu.umass.cs.mallet.base.extract.DefaultTokenizationFilter extends Object implements Serializable

Class edu.umass.cs.mallet.base.extract.LabeledSpans extends ArrayListSequence implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- document
```
Object document
```

Class edu.umass.cs.mallet.base.extract.StringSpan extends Token implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- document
```
CharSequence document
```
- start
```
int start
```
- end
```
int end
```

Class edu.umass.cs.mallet.base.extract.StringTokenization extends TokenSequence implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- document
```
CharSequence document
```

Class edu.umass.cs.mallet.base.extract.TransducerExtractionConfidenceEstimator extends ExtractionConfidenceEstimator implements Serializable
- Serialized Fields
  - confidenceEstimator
```
TransducerConfidenceEstimator confidenceEstimator
```
  - featurePipe
```
Pipe featurePipe
```

Package edu.umass.cs.mallet.base.extract.pipe
- Class edu.umass.cs.mallet.base.extract.pipe.TokenSequence2Tokenization extends Pipe implements Serializable

Package edu.umass.cs.mallet.base.fst

Class edu.umass.cs.mallet.base.fst.CRF extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```
weights
```
DenseVector[] weights
```
constraints
```
DenseVector[] constraints
```
expectations
```
DenseVector[] expectations
```
weightAlphabet
```
Alphabet weightAlphabet
```
trainable
```
boolean trainable
```
gatheringConstraints
```
boolean gatheringConstraints
```
defaultFeatureIndex
```
int defaultFeatureIndex
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
cachedCostStale
```
boolean cachedCostStale
```
cachedGradientStale
```
boolean cachedGradientStale
```
featureSelections
```
FeatureSelection[] featureSelections
```
printGradient
```
boolean printGradient
```

Class edu.umass.cs.mallet.base.fst.CRF_PL extends CRF4 implements Serializable
- Serialized Fields
  - dumpProbabilities
```
boolean dumpProbabilities
```
  - gatheringTrainingData
```
boolean gatheringTrainingData
```
  - trainingGatheredFor
```
InstanceList trainingGatheredFor
```
  - trainingSets
```
List<E>[][] trainingSets
```
  - startingInstances
```
List<E> startingInstances
```
  - endingInstances
```
List<E> endingInstances
```
  - normalizeCosts
```
boolean normalizeCosts
```
  - inum
```
int inum
```
  - numOriginalStates
```
int numOriginalStates
```
  - originalStateNames
```
Alphabet originalStateNames
```
Class edu.umass.cs.mallet.base.fst.CRF_PL.MaximizableCRF_PL extends CRF4.MaximizableCRF implements Serializable
Class edu.umass.cs.mallet.base.fst.CRF_PL.State extends CRF4.State implements Serializable
- Serialized Fields
  - prevWeightsIndices
```
int[][] prevWeightsIndices
```
Class edu.umass.cs.mallet.base.fst.CRF_PL.TransitionIterator extends CRF4.TransitionIterator implements Serializable
- Serialized Fields
  - fv0
```
FeatureVector fv0
```
  - fv1
```
FeatureVector fv1
```
  - ip
```
int ip
```
  - isStart
```
boolean isStart
```
  - isLast
```
boolean isLast
```

Class edu.umass.cs.mallet.base.fst.CRF.MinimizableCRF extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

trainingSet
```
InstanceList trainingSet
```
cachedCost
```
double cachedCost
```
cachedGradient
```
DenseVector cachedGradient
```
infiniteCosts
```
BitSet infiniteCosts
```
numParameters
```
int numParameters
```
crf
```
CRF crf
```

Class edu.umass.cs.mallet.base.fst.CRF.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

initialConstraint
```
double initialConstraint
```
initialExpectation
```
double initialExpectation
```
finalConstraint
```
double finalConstraint
```
finalExpectation
```
double finalExpectation
```
name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
CRF.State[] destinations
```
weightsIndices
```
int[] weightsIndices
```
labels
```
String[] labels
```
crf
```
CRF crf
```

Class edu.umass.cs.mallet.base.fst.CRF.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
CRF.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
costs
```
double[] costs
```
input
```
FeatureVector input
```
crf
```
CRF crf
```

Class edu.umass.cs.mallet.base.fst.CRF2 extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```
weights
```
SparseVector[] weights
```
constraints
```
SparseVector[] constraints
```
expectations
```
SparseVector[] expectations
```
defaultWeights
```
double[] defaultWeights
```
defaultConstraints
```
double[] defaultConstraints
```
defaultExpectations
```
double[] defaultExpectations
```
weightsPresent
```
BitSet[] weightsPresent
```
weightAlphabet
```
Alphabet weightAlphabet
```
trainable
```
boolean trainable
```
gatheringConstraints
```
boolean gatheringConstraints
```
gatheringWeightsPresent
```
boolean gatheringWeightsPresent
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
cachedCostStale
```
boolean cachedCostStale
```
cachedGradientStale
```
boolean cachedGradientStale
```
printGradient
```
boolean printGradient
```

Class edu.umass.cs.mallet.base.fst.CRF2.MinimizableCRF extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

trainingSet
```
InstanceList trainingSet
```
cachedCost
```
double cachedCost
```
cachedGradient
```
DenseVector cachedGradient
```
infiniteCosts
```
BitSet infiniteCosts
```
numParameters
```
int numParameters
```
crf
```
CRF2 crf
```

Class edu.umass.cs.mallet.base.fst.CRF2.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

initialConstraint
```
double initialConstraint
```
initialExpectation
```
double initialExpectation
```
finalConstraint
```
double finalConstraint
```
finalExpectation
```
double finalExpectation
```
name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
CRF2.State[] destinations
```
weightsIndices
```
int[] weightsIndices
```
labels
```
String[] labels
```
crf
```
CRF2 crf
```

Class edu.umass.cs.mallet.base.fst.CRF2.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
CRF2.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
costs
```
double[] costs
```
input
```
FeatureVector input
```
crf
```
CRF2 crf
```

Class edu.umass.cs.mallet.base.fst.CRF3 extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```
weights
```
SparseVector[] weights
```
constraints
```
SparseVector[] constraints
```
expectations
```
SparseVector[] expectations
```
defaultWeights
```
double[] defaultWeights
```
defaultConstraints
```
double[] defaultConstraints
```
defaultExpectations
```
double[] defaultExpectations
```
weightsPresent
```
BitSet[] weightsPresent
```
globalFeatureSelection
```
FeatureSelection globalFeatureSelection
```
featureSelections
```
FeatureSelection[] featureSelections
```
weightAlphabet
```
Alphabet weightAlphabet
```
trainable
```
boolean trainable
```
gatheringConstraints
```
boolean gatheringConstraints
```
gatheringWeightsPresent
```
boolean gatheringWeightsPresent
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
cachedCostStale
```
boolean cachedCostStale
```
cachedGradientStale
```
boolean cachedGradientStale
```
someTrainingDone
```
boolean someTrainingDone
```
featureInducers
```
ArrayList<E> featureInducers
```
priorInitialCost
```
double[] priorInitialCost
```
priorFinalCost
```
double[] priorFinalCost
```
printGradient
```
boolean printGradient
```

Class edu.umass.cs.mallet.base.fst.CRF3.MinimizableCRF extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

trainingSet
```
InstanceList trainingSet
```
cachedCost
```
double cachedCost
```
cachedGradient
```
DenseVector cachedGradient
```
infiniteCosts
```
BitSet infiniteCosts
```
numParameters
```
int numParameters
```
crf
```
CRF3 crf
```

Class edu.umass.cs.mallet.base.fst.CRF3.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

initialConstraint
```
double initialConstraint
```
initialExpectation
```
double initialExpectation
```
finalConstraint
```
double finalConstraint
```
finalExpectation
```
double finalExpectation
```
name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
CRF3.State[] destinations
```
weightsIndices
```
int[][] weightsIndices
```
labels
```
String[] labels
```
crf
```
CRF3 crf
```

Class edu.umass.cs.mallet.base.fst.CRF3.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
CRF3.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
costs
```
double[] costs
```
input
```
FeatureVector input
```
crf
```
CRF3 crf
```

Class edu.umass.cs.mallet.base.fst.CRF4 extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```
weights
```
SparseVector[] weights
```
constraints
```
SparseVector[] constraints
```
expectations
```
SparseVector[] expectations
```
defaultWeights
```
double[] defaultWeights
```
defaultConstraints
```
double[] defaultConstraints
```
defaultExpectations
```
double[] defaultExpectations
```
weightsPresent
```
BitSet[] weightsPresent
```
globalFeatureSelection
```
FeatureSelection globalFeatureSelection
```
featureSelections
```
FeatureSelection[] featureSelections
```
weightsFrozen
```
boolean[] weightsFrozen
```
weightAlphabet
```
Alphabet weightAlphabet
```
trainable
```
boolean trainable
```
gatheringConstraints
```
boolean gatheringConstraints
```
gatheringWeightsPresent
```
boolean gatheringWeightsPresent
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
useSparseWeights
```
boolean useSparseWeights
```
cachedValueStale
```
boolean cachedValueStale
```
cachedGradientStale
```
boolean cachedGradientStale
```
someTrainingDone
```
boolean someTrainingDone
```
transductionType
```
int transductionType
```
featureInducers
```
ArrayList<E> featureInducers
```
printGradient
```
boolean printGradient
```

Class edu.umass.cs.mallet.base.fst.CRF4.MaximizableCRF extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

trainingSet
```
InstanceList trainingSet
```
cachedValue
```
double cachedValue
```
cachedGradient
```
DenseVector cachedGradient
```
infiniteValues
```
BitSet infiniteValues
```
numParameters
```
int numParameters
```
crf
```
CRF4 crf
```

Class edu.umass.cs.mallet.base.fst.CRF4.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

initialConstraint
```
double initialConstraint
```
initialExpectation
```
double initialExpectation
```
finalConstraint
```
double finalConstraint
```
finalExpectation
```
double finalExpectation
```
name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
CRF4.State[] destinations
```
weightsIndices
```
int[][] weightsIndices
```
labels
```
String[] labels
```
crf
```
CRF4 crf
```

Class edu.umass.cs.mallet.base.fst.CRF4.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
CRF4.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
costs
```
double[] costs
```
input
```
FeatureVector input
```
crf
```
CRF4 crf
```

Class edu.umass.cs.mallet.base.fst.CRFByGISUpdate extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```
weights
```
SparseVector[] weights
```
constraints
```
SparseVector[] constraints
```
expectations
```
SparseVector[] expectations
```
defaultWeights
```
double[] defaultWeights
```
defaultConstraints
```
double[] defaultConstraints
```
defaultExpectations
```
double[] defaultExpectations
```
weightsPresent
```
BitSet[] weightsPresent
```
globalFeatureSelection
```
FeatureSelection globalFeatureSelection
```
featureSelections
```
FeatureSelection[] featureSelections
```
weightAlphabet
```
Alphabet weightAlphabet
```
trainable
```
boolean trainable
```
gatheringConstraints
```
boolean gatheringConstraints
```
gatheringWeightsPresent
```
boolean gatheringWeightsPresent
```
usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
gaussianPriorVariance
```
double gaussianPriorVariance
```
hyperbolicPriorSlope
```
double hyperbolicPriorSlope
```
hyperbolicPriorSharpness
```
double hyperbolicPriorSharpness
```
cachedCostStale
```
boolean cachedCostStale
```
cachedGISUpdateStale
```
boolean cachedGISUpdateStale
```
someTrainingDone
```
boolean someTrainingDone
```
featureInducers
```
ArrayList<E> featureInducers
```
printGradient
```
boolean printGradient
```

Class edu.umass.cs.mallet.base.fst.CRFByGISUpdate.MinimizableCRF extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

trainingSet
```
InstanceList trainingSet
```
cachedCost
```
double cachedCost
```
cachedGISUpdate
```
DenseVector cachedGISUpdate
```
infiniteCosts
```
BitSet infiniteCosts
```
numParameters
```
int numParameters
```
crf
```
CRFByGISUpdate crf
```
updatedGIS
```
int updatedGIS
```
maxCount
```
double maxCount
```

Class edu.umass.cs.mallet.base.fst.CRFByGISUpdate.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

initialConstraint
```
double initialConstraint
```
initialExpectation
```
double initialExpectation
```
finalConstraint
```
double finalConstraint
```
finalExpectation
```
double finalExpectation
```
name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
CRFByGISUpdate.State[] destinations
```
weightsIndices
```
int[][] weightsIndices
```
labels
```
String[] labels
```
crf
```
CRFByGISUpdate crf
```

Class edu.umass.cs.mallet.base.fst.CRFByGISUpdate.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
CRFByGISUpdate.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
costs
```
double[] costs
```
input
```
FeatureVector input
```
crf
```
CRFByGISUpdate crf
```

Class edu.umass.cs.mallet.base.fst.FeatureTransducer extends Transducer implements Serializable

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```

initialStateCounts

Multinomial.Estimator initialStateCounts

finalStateCounts
```
Multinomial.Estimator finalStateCounts
```
trainable
```
boolean trainable
```

Class edu.umass.cs.mallet.base.fst.FeatureTransducer.State extends Transducer.State implements Serializable
- Serialized Fields
  - name
```
String name
```
  - index
```
int index
```
  - transitions
```
FeatureTransducer.Transition[] transitions
```
  - input2transitions
```
TIntObjectHashMap input2transitions
```
  - transitionCounts
```
Multinomial.Estimator transitionCounts
```
Class edu.umass.cs.mallet.base.fst.FeatureTransducer.TransitionIterator extends Transducer.TransitionIterator implements Serializable
- Serialized Fields
  - index
```
int index
```
  - transition
```
FeatureTransducer.Transition transition
```
  - source
```
FeatureTransducer.State source
```
  - input
```
int input
```

Class edu.umass.cs.mallet.base.fst.HMM extends Transducer implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

inputAlphabet
```
Alphabet inputAlphabet
```
outputAlphabet
```
Alphabet outputAlphabet
```
states
```
ArrayList<E> states
```
initialStates
```
ArrayList<E> initialStates
```
name2state
```
HashMap<K,V> name2state
```

transitionEstimator

Multinomial.Estimator[] transitionEstimator

emissionEstimator

Multinomial.Estimator[] emissionEstimator

initialEstimator
```
Multinomial.Estimator initialEstimator
```
transitionMultinomial
```
Multinomial[] transitionMultinomial
```
emissionMultinomial
```
Multinomial[] emissionMultinomial
```
initialMultinomial
```
Multinomial initialMultinomial
```
trainable
```
boolean trainable
```

Class edu.umass.cs.mallet.base.fst.HMM.State extends Transducer.State implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

name
```
String name
```
index
```
int index
```
destinationNames
```
String[] destinationNames
```
destinations
```
HMM.State[] destinations
```
labels
```
String[] labels
```
hmm
```
HMM hmm
```

Class edu.umass.cs.mallet.base.fst.HMM.TransitionIterator extends Transducer.TransitionIterator implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

source
```
HMM.State source
```
index
```
int index
```
nextIndex
```
int nextIndex
```
inputPos
```
int inputPos
```
costs
```
double[] costs
```
input
```
FeatureSequence input
```
hmm
```
HMM hmm
```

Class edu.umass.cs.mallet.base.fst.MEMM extends CRF4 implements Serializable
- Serialized Fields
  - gatheringTrainingData
```
boolean gatheringTrainingData
```
  - trainingGatheredFor
```
InstanceList trainingGatheredFor
```
Class edu.umass.cs.mallet.base.fst.MEMM.MaximizableMEMM extends CRF4.MaximizableCRF implements Serializable
Class edu.umass.cs.mallet.base.fst.MEMM.State extends CRF4.State implements Serializable
- Serialized Fields
  - trainingSet
```
InstanceList trainingSet
```
Class edu.umass.cs.mallet.base.fst.MEMM.TransitionIterator extends CRF4.TransitionIterator implements Serializable
- Serialized Fields
  - sum
```
double sum
```
Class edu.umass.cs.mallet.base.fst.SimpleTagger.SimpleTaggerSentence2FeatureVectorSequence extends Pipe implements Serializable
Class edu.umass.cs.mallet.base.fst.Transducer extends Object implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
    Throws:
    
    IOException
    
    ClassNotFoundException
  - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
    Throws:
    
    IOException
- Serialized Fields
  - UseForwardBackwardBeam
```
boolean UseForwardBackwardBeam
```
  - beamWidth
```
int beamWidth
```
  - KLeps
```
double KLeps
```
  - Rmin
```
double Rmin
```
  - nstatesExpl
```
double[] nstatesExpl
```
  - curIter
```
int curIter
```
  - tctIter
```
int tctIter
```
  - curAvgNstatesExpl
```
double curAvgNstatesExpl
```
  - inputPipe
```
Pipe inputPipe
```
    A pipe that should produce a Sequence in the "data" slot, (and possibly one in the "target" slot also
  - outputPipe
```
Pipe outputPipe
```
    A pipe that should expect a ViterbiPath in the "target" slot, and should produce something printable in the "source" slot that indicates the results of transduction.

Class edu.umass.cs.mallet.base.fst.Transducer.State extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- initialCost
```
double initialCost
```
- finalCost
```
double finalCost
```

Class edu.umass.cs.mallet.base.fst.Transducer.TransitionIterator extends Object implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Package edu.umass.cs.mallet.base.fst.confidence
- Class edu.umass.cs.mallet.base.fst.confidence.ConstrainedForwardBackwardConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
- Class edu.umass.cs.mallet.base.fst.confidence.GammaAverageConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - string2stateIndex
```
HashMap<K,V> string2stateIndex
```
- Class edu.umass.cs.mallet.base.fst.confidence.GammaProductConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - string2stateIndex
```
HashMap<K,V> string2stateIndex
```
- Class edu.umass.cs.mallet.base.fst.confidence.MaxEntConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - meTrainer
```
MaxEntTrainer meTrainer
```
    - meClassifier
```
MaxEnt meClassifier
```
    - pipe
```
Pipe pipe
```
    - correct
```
String correct
```
    - incorrect
```
String incorrect
```
- Class edu.umass.cs.mallet.base.fst.confidence.RandomConfidenceEstimator extends TransducerConfidenceEstimator implements Serializable
  - Serialized Fields
    - generator
```
Random generator
```
- Class edu.umass.cs.mallet.base.fst.confidence.TransducerConfidenceEstimator extends Object implements Serializable
  - Serialized Fields
    - model
```
Transducer model
```
    - segmentConfidences
```
Vector<E> segmentConfidences
```

Package edu.umass.cs.mallet.base.fst.tests

Class edu.umass.cs.mallet.base.fst.tests.TestCRF.TestCRF2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF2.TestCRF2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF2.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF3.TestCRF2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF3.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF4.TestCRF2String extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestCRF4.TestCRFTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.fst.tests.TestMEMM.TestMEMM2String extends Pipe implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException
```
    Throws:
    
    IOException
  - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
    Throws:
    
    IOException
Class edu.umass.cs.mallet.base.fst.tests.TestMEMM.TestMEMMTokenSequenceRemoveSpaces extends Pipe implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException
```
    Throws:
    
    IOException
  - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
    Throws:
    
    IOException

Package edu.umass.cs.mallet.base.maximize
- Class edu.umass.cs.mallet.base.maximize.MaximizeException extends RuntimeException implements Serializable

Package edu.umass.cs.mallet.base.pipe

Class edu.umass.cs.mallet.base.pipe.AddClassifierTokenPredictions extends Pipe implements Serializable

serialVersionUID:

1L
- Serialized Fields
  - m_predRanks2add
```
int[] m_predRanks2add
```
  - m_tokenClassifiers
```
AddClassifierTokenPredictions.TokenClassifiers m_tokenClassifiers
```
  - m_binary
```
boolean m_binary
```
  - m_inProduction
```
boolean m_inProduction
```
  - m_dataAlphabet
```
Alphabet m_dataAlphabet
```

Class edu.umass.cs.mallet.base.pipe.AddClassifierTokenPredictions.TokenClassifiers extends Classifier implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

m_numCV
```
int m_numCV
```
m_randSeed
```
int m_randSeed
```
m_trainer
```
ClassifierTrainer m_trainer
```
m_tokenClassifier
```
Classifier m_tokenClassifier
```
m_table
```
HashMap<K,V> m_table
```

Class edu.umass.cs.mallet.base.pipe.Array2FeatureVector extends Pipe implements Serializable
Class edu.umass.cs.mallet.base.pipe.AugmentableFeatureVectorAddConjunctions extends Pipe implements Serializable
- Serialized Fields
  - conjunctions
```
FeatureConjunction.List conjunctions
```
Class edu.umass.cs.mallet.base.pipe.AugmentableFeatureVectorLogScale extends Pipe implements Serializable

Class edu.umass.cs.mallet.base.pipe.CharSequence2CharNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- n
```
int n
```
- distinguishBorders
```
boolean distinguishBorders
```

Class edu.umass.cs.mallet.base.pipe.CharSequence2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- lexer
```
CharSequenceLexer lexer
```

Class edu.umass.cs.mallet.base.pipe.CharSequenceArray2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.CharSequenceReplace extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- regex
```
Pattern regex
```
- replacement
```
String replacement
```

Class edu.umass.cs.mallet.base.pipe.CharSubsequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- regex
```
Pattern regex
```
- groupIndex
```
int groupIndex
```

Class edu.umass.cs.mallet.base.pipe.Classification2ConfidencePredictingFeatureVector extends Pipe implements Serializable
Class edu.umass.cs.mallet.base.pipe.Csv2Array extends Pipe implements Serializable
- Serialized Fields
  - lexer
```
CharSequenceLexer lexer
```
  - numberFeatures
```
int numberFeatures
```
Class edu.umass.cs.mallet.base.pipe.Csv2FeatureVector extends Pipe implements Serializable
Class edu.umass.cs.mallet.base.pipe.Directory2FileIterator extends Pipe implements Serializable
- Serialized Fields
  - fileFilter
```
FileFilter fileFilter
```
  - labelPattern
```
Pattern labelPattern
```
Class edu.umass.cs.mallet.base.pipe.FeatureSequence2AugmentableFeatureVector extends Pipe implements Serializable
- Serialized Fields
  - binary
```
boolean binary
```

Class edu.umass.cs.mallet.base.pipe.FeatureSequence2FeatureVector extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- binary
```
boolean binary
```

Class edu.umass.cs.mallet.base.pipe.FeatureValueString2FeatureVector extends Pipe implements Serializable

Class edu.umass.cs.mallet.base.pipe.FeatureVectorConjunctions extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.Filename2CharSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.Input2CharSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.InstanceListTrimFeaturesByCount extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- minCount
```
int minCount
```

Class edu.umass.cs.mallet.base.pipe.IteratingPipe extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

iteratedPipe
```
Pipe iteratedPipe
```
accumulator
```
PipeOutputAccumulator accumulator
```

Class edu.umass.cs.mallet.base.pipe.LineGroupString2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- lexer
```
CharSequenceLexer lexer
```

Class edu.umass.cs.mallet.base.pipe.MakeAmpersandXMLFriendly extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.Noop extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.ParallelPipes extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

pipes
```
ArrayList<E> pipes
```
accumulator
```
PipeOutputAccumulator accumulator
```

Class edu.umass.cs.mallet.base.pipe.Pipe extends Object implements Serializable

serialVersionUID:

1L
- Serialization Methods
  - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
    Throws:
    
    IOException
    
    ClassNotFoundException
  - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
    Throws:
    
    IOException
  - readResolve
```
public Object readResolve()
                   throws ObjectStreamException
```
    This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.
    
    Throws:
    
    ObjectStreamException
- Serialized Fields
  - parent
```
Pipe parent
```
  - dataDict
```
Alphabet dataDict
```
  - targetDict
```
Alphabet targetDict
```
  - dataDictClass
```
Class<T> dataDictClass
```
  - targetDictClass
```
Class<T> targetDictClass
```
  - dataAlphabetResolved
```
boolean dataAlphabetResolved
```
  - targetAlphabetResolved
```
boolean targetAlphabetResolved
```
  - targetProcessing
```
boolean targetProcessing
```
  - instanceId
```
VMID instanceId
```
Class edu.umass.cs.mallet.base.pipe.PipeException extends Exception implements Serializable

Class edu.umass.cs.mallet.base.pipe.PipeOutputArrayList extends ArrayList implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.PrintInput extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```
- stream
```
PrintStream stream
```

Class edu.umass.cs.mallet.base.pipe.PrintInputAndTarget extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```

Class edu.umass.cs.mallet.base.pipe.PrintTokenSequenceFeatures extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```

Class edu.umass.cs.mallet.base.pipe.SaveDataInSource extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.SelectiveSGML2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

sgmlPattern
```
Pattern sgmlPattern
```
lexer
```
CharSequenceLexer lexer
```
backgroundTag
```
String backgroundTag
```
allowedTags
```
Set<E> allowedTags
```

Class edu.umass.cs.mallet.base.pipe.SerialPipes extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- pipes
```
ArrayList<E> pipes
```

Class edu.umass.cs.mallet.base.pipe.SGML2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

sgmlPattern
```
Pattern sgmlPattern
```
lexer
```
CharSequenceLexer lexer
```
backgroundTag
```
String backgroundTag
```
saveSource
```
boolean saveSource
```

Class edu.umass.cs.mallet.base.pipe.SimpleTaggerSentence2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- setTokensAsFeatures
```
boolean setTokensAsFeatures
```

Class edu.umass.cs.mallet.base.pipe.SourceLocation2TokenSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- lexer
```
CharSequenceLexer lexer
```

Class edu.umass.cs.mallet.base.pipe.StringAddNewLineDelimiter extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- delim
```
String delim
```

Class edu.umass.cs.mallet.base.pipe.Target2FeatureSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.Target2Label extends Pipe implements Serializable

Class edu.umass.cs.mallet.base.pipe.Target2LabelSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.TargetRememberLastLabel extends Pipe implements Serializable
- Serialized Fields
  - backgroundLabel
```
String backgroundLabel
```
  - offset
```
boolean offset
```

Class edu.umass.cs.mallet.base.pipe.Token2FeatureVector extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- augmentable
```
boolean augmentable
```
- binary
```
boolean binary
```

Class edu.umass.cs.mallet.base.pipe.TokenSequence2FeatureSequence extends Pipe implements Serializable

Class edu.umass.cs.mallet.base.pipe.TokenSequence2FeatureSequenceWithBigrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- biDictionary
```
Alphabet biDictionary
```

Class edu.umass.cs.mallet.base.pipe.TokenSequence2FeatureVectorSequence extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

augmentable
```
boolean augmentable
```
binary
```
boolean binary
```
growAlphabet
```
boolean growAlphabet
```

Class edu.umass.cs.mallet.base.pipe.TokenSequence2TokenIterator extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.TokenSequenceLowercase extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Class edu.umass.cs.mallet.base.pipe.TokenSequenceMatchDataAndTarget extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

regex
```
Pattern regex
```
dataGroup
```
int dataGroup
```
targetGroup
```
int targetGroup
```

Class edu.umass.cs.mallet.base.pipe.TokenSequenceNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- gramSizes
```
int[] gramSizes
```

Class edu.umass.cs.mallet.base.pipe.TokenSequenceParseFeatureString extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

realValued
```
boolean realValued
```
specifyFeatureNames
```
boolean specifyFeatureNames
```
nameValueSeparator
```
String nameValueSeparator
```

Class edu.umass.cs.mallet.base.pipe.TokenSequenceRemoveNonAlpha extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- markDeletions
```
boolean markDeletions
```

Class edu.umass.cs.mallet.base.pipe.TokenSequenceRemoveStopwords extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- caseSensitive
```
boolean caseSensitive
```
- markDeletions
```
boolean markDeletions
```

Package edu.umass.cs.mallet.base.pipe.tests
- Class edu.umass.cs.mallet.base.pipe.tests.TestInstancePipe.Array2ArrayIterator extends Pipe implements Serializable
- Class edu.umass.cs.mallet.base.pipe.tests.TestSGML2TokenSequence.Array2ArrayIterator extends Pipe implements Serializable

Package edu.umass.cs.mallet.base.pipe.tsf

Class edu.umass.cs.mallet.base.pipe.tsf.CountMatches extends Pipe implements Serializable
- Serialized Fields
  - regex
```
Pattern regex
```
  - feature
```
String feature
```
  - normalizeByCharLength
```
boolean normalizeByCharLength
```
  - countIsBinary
```
boolean countIsBinary
```
Class edu.umass.cs.mallet.base.pipe.tsf.CountMatchesAlignedWithOffsets extends Pipe implements Serializable
- Serialized Fields
  - regex
```
Pattern regex
```
  - feature
```
String feature
```
  - offsets
```
int[] offsets
```
  - normalizeByMatchCount
```
boolean normalizeByMatchCount
```
Class edu.umass.cs.mallet.base.pipe.tsf.CountMatchesMatching extends Pipe implements Serializable
- Serialized Fields
  - feature
```
String feature
```
  - regex
```
Pattern regex
```
  - moreSpecificRegex
```
Pattern moreSpecificRegex
```
  - normalizeByRegexMatches
```
boolean normalizeByRegexMatches
```

Class edu.umass.cs.mallet.base.pipe.tsf.FeaturesInWindow extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

namePrefix
```
String namePrefix
```
namePrefixLeft
```
String namePrefixLeft
```
leftBoundary
```
int leftBoundary
```
rightBoundary
```
int rightBoundary
```
featureRegex
```
Pattern featureRegex
```
includeBeginEndBoundaries
```
boolean includeBeginEndBoundaries
```
includeCurrentToken
```
boolean includeCurrentToken
```

Class edu.umass.cs.mallet.base.pipe.tsf.FeaturesOfFirstMention extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

namePrefix
```
String namePrefix
```
firstMentionName
```
String firstMentionName
```
featureRegex
```
Pattern featureRegex
```
filterRegex
```
Pattern filterRegex
```
includeFiltered
```
boolean includeFiltered
```

Class edu.umass.cs.mallet.base.pipe.tsf.LexiconMembership extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

name
```
String name
```
lexicon
```
THashSet lexicon
```
ignoreCase
```
boolean ignoreCase
```

Class edu.umass.cs.mallet.base.pipe.tsf.OffsetConjunctions extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

conjunctions
```
int[][] conjunctions
```
includeOriginalSingletons
```
boolean includeOriginalSingletons
```
featureRegex
```
Pattern featureRegex
```

Class edu.umass.cs.mallet.base.pipe.tsf.OffsetFeatureConjunction extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

thisFeatureName
```
String thisFeatureName
```
featurePatterns
```
Pattern[] featurePatterns
```
offsets
```
int[] offsets
```
isNonNegated
```
boolean[] isNonNegated
```
tagAllTimesteps
```
boolean tagAllTimesteps
```

Class edu.umass.cs.mallet.base.pipe.tsf.OffsetPropertyConjunctions extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

conjunctions
```
int[][] conjunctions
```
includeOriginalSingletons
```
boolean includeOriginalSingletons
```
propertyKey
```
String propertyKey
```

Class edu.umass.cs.mallet.base.pipe.tsf.RegexMatches extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- regex
```
Pattern regex
```
- feature
```
String feature
```

Class edu.umass.cs.mallet.base.pipe.tsf.SequencePrintingPipe extends Pipe implements Serializable
- Serialized Fields
  - writer
```
PrintWriter writer
```

Class edu.umass.cs.mallet.base.pipe.tsf.Target2BIOFormat extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- backgroundTag
```
String backgroundTag
```

Class edu.umass.cs.mallet.base.pipe.tsf.TokenText extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```

Class edu.umass.cs.mallet.base.pipe.tsf.TokenTextCharNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

prefix
```
String prefix
```
gramSizes
```
int[] gramSizes
```
distinguishBorders
```
boolean distinguishBorders
```

Class edu.umass.cs.mallet.base.pipe.tsf.TokenTextCharPrefix extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```
- prefixLength
```
int prefixLength
```

Class edu.umass.cs.mallet.base.pipe.tsf.TokenTextCharSuffix extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields
- prefix
```
String prefix
```
- suffixLength
```
int suffixLength
```

Class edu.umass.cs.mallet.base.pipe.tsf.TokenTextNGrams extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

prefix
```
String prefix
```
gramSizes
```
int[] gramSizes
```
distinguishBorders
```
boolean distinguishBorders
```

Class edu.umass.cs.mallet.base.pipe.tsf.TrieLexiconMembership extends Pipe implements Serializable

serialVersionUID:: 1L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:: IOException

Serialized Fields

name
```
String name
```
ignoreCase
```
boolean ignoreCase
```

lexicon

edu.umass.cs.mallet.base.pipe.tsf.TrieLexiconMembership.TrieLexicon lexicon

Package edu.umass.cs.mallet.base.types
- Class edu.umass.cs.mallet.base.types.Alphabet extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
    - readResolve
```
public Object readResolve()
                   throws ObjectStreamException
```
      This gets called after readObject; it lets the object decide whether to return itself or return a previously read in version. We use a hashMap of instanceIds to determine if we have already read in this object.
      
      Throws:
      
      ObjectStreamException
  - Serialized Fields
    - map
```
TObjectIntHashMap map
```
    - entries
```
ArrayList<E> entries
```
    - growthStopped
```
boolean growthStopped
```
    - entryClass
```
Class<T> entryClass
```
    - instanceId
```
VMID instanceId
```
- Class edu.umass.cs.mallet.base.types.ArrayListSequence extends ArrayList implements Serializable
- Class edu.umass.cs.mallet.base.types.AugmentableFeatureVector extends FeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - size
```
int size
```
    - maxSortedIndex
```
int maxSortedIndex
```
- Class edu.umass.cs.mallet.base.types.DenseFeatureVector extends DenseVector implements Serializable
  - Serialized Fields
    - dictionary
```
Alphabet dictionary
```
- Class edu.umass.cs.mallet.base.types.DenseMatrix extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - values
```
double[] values
```
    - hasInfinite
```
boolean hasInfinite
```
- Class edu.umass.cs.mallet.base.types.DenseVector extends DenseMatrix implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
- Class edu.umass.cs.mallet.base.types.ExpGain extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - usingHyperbolicPrior
```
boolean usingHyperbolicPrior
```
    - hyperbolicSlope
```
double hyperbolicSlope
```
    - hyperbolicSharpness
```
double hyperbolicSharpness
```
- Class edu.umass.cs.mallet.base.types.FeatureConjunction extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - name
```
String name
```
    - dictionary
```
Alphabet dictionary
```
    - features
```
int[] features
```
    - negations
```
boolean[] negations
```
    - index
```
int index
```
- Class edu.umass.cs.mallet.base.types.FeatureConjunction.List extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - conjunctions
```
ArrayList<E> conjunctions
```
- Class edu.umass.cs.mallet.base.types.FeatureCounts extends RankedFeatureVector implements Serializable
- Class edu.umass.cs.mallet.base.types.FeatureInducer extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - ranker
```
RankedFeatureVector.Factory ranker
```
    - perLabelRanker
```
RankedFeatureVector.PerLabelFactory perLabelRanker
```
    - beam1
```
int beam1
```
    - beam2
```
int beam2
```
    - fcl
```
FeatureConjunction.List fcl
```
- Class edu.umass.cs.mallet.base.types.FeatureSelection extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - dictionary
```
Alphabet dictionary
```
    - selectedFeatures
```
BitSet selectedFeatures
```
- Class edu.umass.cs.mallet.base.types.FeatureSequence extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - dictionary
```
Alphabet dictionary
```
    - features
```
int[] features
```
    - length
```
int length
```
- Class edu.umass.cs.mallet.base.types.FeatureSequenceWithBigrams extends FeatureSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - biDictionary
```
Alphabet biDictionary
```
    - biFeatures
```
int[] biFeatures
```
- Class edu.umass.cs.mallet.base.types.FeatureVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - dictionary
```
Alphabet dictionary
```
- Class edu.umass.cs.mallet.base.types.FeatureVectorSequence extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - sequence
```
FeatureVector[] sequence
```
- Class edu.umass.cs.mallet.base.types.GainRatio extends RankedFeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - m_splitPoints
```
double[] m_splitPoints
```
    - m_baseEntropy
```
double m_baseEntropy
```
    - m_baseLabelDistribution
```
LabelVector m_baseLabelDistribution
```
    - m_numSplitPointsForBestFeature
```
int m_numSplitPointsForBestFeature
```
    - m_minNumInsts
```
int m_minNumInsts
```
- Class edu.umass.cs.mallet.base.types.GradientGain extends RankedFeatureVector implements Serializable
- Class edu.umass.cs.mallet.base.types.HashedSparseVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - index2location
```
TIntIntHashMap index2location
```
    - maxIndex
```
int maxIndex
```
- Class edu.umass.cs.mallet.base.types.IndexedSparseVector extends SparseVector implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
- Class edu.umass.cs.mallet.base.types.InfoGain extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - baseEntropy
```
double baseEntropy
```
    - baseLabelDistribution
```
LabelVector baseLabelDistribution
```
- Class edu.umass.cs.mallet.base.types.Instance extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - data
```
Object data
```
    - target
```
Object target
```
    - name
```
Object name
```
    - source
```
Object source
```
    - pipe
```
Pipe pipe
```
    - properties
```
PropertyList properties
```
    - locked
```
boolean locked
```
- Class edu.umass.cs.mallet.base.types.InstanceList extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - instances
```
ArrayList<E> instances
```
    - instanceWeights
```
DoubleList instanceWeights
```
    - featureSelection
```
FeatureSelection featureSelection
```
    - perLabelFeatureSelection
```
FeatureSelection[] perLabelFeatureSelection
```
    - pipe
```
Pipe pipe
```
    - dataVocab
```
Alphabet dataVocab
```
    - targetVocab
```
Alphabet targetVocab
```
    - dataClass
```
Class<T> dataClass
```
    - targetClass
```
Class<T> targetClass
```
- Class edu.umass.cs.mallet.base.types.InstanceList.CrossValidationIterator extends Object implements Serializable
  - Serialized Fields
    - nfolds
```
int nfolds
```
    - folds
```
InstanceList[] folds
```
    - index
```
int index
```
- Class edu.umass.cs.mallet.base.types.InstanceList.Iterator extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - index
```
int index
```
- Class edu.umass.cs.mallet.base.types.KLGain extends RankedFeatureVector implements Serializable
- Class edu.umass.cs.mallet.base.types.Label extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - entry
```
Object entry
```
    - dictionary
```
LabelAlphabet dictionary
```
    - index
```
int index
```
- Class edu.umass.cs.mallet.base.types.LabelAlphabet extends Alphabet implements Serializable
  - Serialized Fields
    - labels
```
ArrayList<E> labels
```
- Class edu.umass.cs.mallet.base.types.Labels extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - labels
```
Label[] labels
```
- Class edu.umass.cs.mallet.base.types.LabelSequence extends FeatureSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
- Class edu.umass.cs.mallet.base.types.LabelsSequence extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - seq
```
Labels[] seq
```
- Class edu.umass.cs.mallet.base.types.LabelVector extends RankedFeatureVector implements Serializable
- Class edu.umass.cs.mallet.base.types.Matrix2 extends DenseMatrix implements Serializable
  - Serialized Fields
    - nr
```
int nr
```
    - nc
```
int nc
```
- Class edu.umass.cs.mallet.base.types.Matrixn extends DenseMatrix implements Serializable
  - Serialized Fields
    - numDimensions
```
int numDimensions
```
    - sizes
```
int[] sizes
```
- Class edu.umass.cs.mallet.base.types.Multinomial extends FeatureVector implements Serializable
  
  serialVersionUID:
  
  1L
- Class edu.umass.cs.mallet.base.types.Multinomial.Estimator extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - dictionary
```
Alphabet dictionary
```
    - counts
```
double[] counts
```
    - size
```
int size
```
- Class edu.umass.cs.mallet.base.types.Multinomial.LaplaceEstimator extends Multinomial.MEstimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
- Class edu.umass.cs.mallet.base.types.Multinomial.Logged extends Multinomial implements Serializable
  
  serialVersionUID:
  
  1L
- Class edu.umass.cs.mallet.base.types.Multinomial.MAPEstimator extends Multinomial.Estimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - prior
```
Dirichlet prior
```
- Class edu.umass.cs.mallet.base.types.Multinomial.MEstimator extends Multinomial.Estimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - m
```
double m
```
- Class edu.umass.cs.mallet.base.types.Multinomial.MLEstimator extends Multinomial.MEstimator implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
- Class edu.umass.cs.mallet.base.types.PagedInstanceList extends InstanceList implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - instancesPerPage
```
int instancesPerPage
```
      number of instances to put in one page. if -1, determine at first call to swapOutExcept
    - swapDir
```
File swapDir
```
      directory to store swap files
    - inMemory
```
BitSet inMemory
```
      inMemory.get(i) == true iff instances.get(i) is in memory, else 0
    - pageNotInMemory
```
BitSet pageNotInMemory
```
      pageNotInMemory.get(i) == true iff page i is not in memory, else 0
    - collectGarbage
```
boolean collectGarbage
```
      recommend garbage collection after every swap out?
    - id
```
VMID id
```
      uniquely identifies this InstanceList. Used in creating serialized page name for swap files.
- Class edu.umass.cs.mallet.base.types.PartiallyRankedFeatureVector extends RankedFeatureVector implements Serializable
  - Serialized Fields
    - numRanked
```
int numRanked
```
- Class edu.umass.cs.mallet.base.types.RankedFeatureVector extends FeatureVector implements Serializable
  - Serialized Fields
    - rankOrder
```
int[] rankOrder
```
    - sortedTo
```
int sortedTo
```
- Class edu.umass.cs.mallet.base.types.SparseMatrixn extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - values
```
SparseVector values
```
    - numDimensions
```
int numDimensions
```
    - sizes
```
int[] sizes
```
    - singleSize
```
int singleSize
```
- Class edu.umass.cs.mallet.base.types.SparseVector extends Object implements Serializable
  
  serialVersionUID:
  
  2L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - indices
```
int[] indices
```
      If the vector is sparse, then both indices and values are sparse. Indices into these arrays are called ``locations'' in the below. The indices[] array maps locations to indices of the (virtual) dense array that's being represented. value[] maps locations to values.
    - values
```
double[] values
```
    - hasInfinite
```
boolean hasInfinite
```
- Class edu.umass.cs.mallet.base.types.StringEditFeatureVectorSequence extends FeatureVectorSequence implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - string1Length
```
int string1Length
```
    - string2Length
```
int string2Length
```
    - string1
```
String string1
```
    - string2
```
String string2
```
    - string1Blocks
```
String[] string1Blocks
```
    - string2Blocks
```
String[] string2Blocks
```
    - string1Present
```
TObjectIntHashMap string1Present
```
    - string2Present
```
TObjectIntHashMap string2Present
```
    - lexicon
```
TObjectIntHashMap lexicon
```
    - block1Indices
```
int[] block1Indices
```
    - block2Indices
```
int[] block2Indices
```
    - delim
```
char delim
```
- Class edu.umass.cs.mallet.base.types.StringEditVector extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - _delimiter
```
String _delimiter
```
    - _string1
```
String _string1
```
    - _string2
```
String _string2
```
    - _match
```
int _match
```
- Class edu.umass.cs.mallet.base.types.StringKernel extends LinkedHashMap implements Serializable
  - Serialized Fields
    - normalizeCase
```
boolean normalizeCase
```
    - lambda
```
double lambda
```
    - n
```
int n
```
    - cache
```
boolean cache
```
- Class edu.umass.cs.mallet.base.types.Token extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - text
```
String text
```
    - properties
```
PropertyList properties
```
    - features
```
PropertyList features
```
- Class edu.umass.cs.mallet.base.types.TokenSequence extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - tokens
```
ArrayList<E> tokens
```
    - properties
```
PropertyList properties
```
Package edu.umass.cs.mallet.base.util
- Class edu.umass.cs.mallet.base.util.BshInterpreter extends bsh.Interpreter implements Serializable
  - Serialized Fields
    - interpreter
```
bsh.Interpreter interpreter
```
- Class edu.umass.cs.mallet.base.util.CharSequenceLexer extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - regex
```
Pattern regex
```
    - matcher
```
Matcher matcher
```
    - input
```
CharSequence input
```
    - matchText
```
String matchText
```
    - matchTextFresh
```
boolean matchTextFresh
```
- Class edu.umass.cs.mallet.base.util.DoubleList extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - data
```
double[] data
```
    - size
```
int size
```
- Class edu.umass.cs.mallet.base.util.ProgressMessageLogRecord extends LogRecord implements Serializable
- Class edu.umass.cs.mallet.base.util.PropertyList extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - next
```
PropertyList next
```
    - key
```
String key
```
- Class edu.umass.cs.mallet.base.util.PropertyList.Iterator extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - property
```
PropertyList property
```
    - nextProperty
```
PropertyList nextProperty
```
    - deletedKeys
```
HashSet<E> deletedKeys
```
    - nextCalled
```
boolean nextCalled
```
    - returnNumeric
```
boolean returnNumeric
```
    - returnObject
```
boolean returnObject
```
- Class edu.umass.cs.mallet.base.util.PropertyList.NumericIterator extends PropertyList.Iterator implements Serializable
- Class edu.umass.cs.mallet.base.util.PropertyList.ObjectIterator extends PropertyList.Iterator implements Serializable
- Class edu.umass.cs.mallet.base.util.Random extends Object implements Serializable
  
  serialVersionUID:
  
  3905348978240129619L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - mt
```
int[] mt
```
    - mti
```
int mti
```
    - mag01
```
int[] mag01
```
    - nextGaussian
```
double nextGaussian
```
    - haveNextGaussian
```
boolean haveNextGaussian
```
Package edu.umass.cs.mallet.projects.seg_plus_coref.anaphora
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.AceTypeFeature extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.AcronymOf extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.AffixOfMentionPair extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.GenderMentionPair extends Pipe implements Serializable
  - Serialized Fields
    - femaleMap
```
HashMap<K,V> femaleMap
```
    - maleMap
```
HashMap<K,V> maleMap
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.HobbsDistanceMentionPair extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.LinearDistanceMentionPair extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPair2FeatureVector extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPair2FeatureVectorFilter extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairAntecedentPosition extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairHeadIdentical extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairIdentical extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairNPDistance extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairSentenceDistance extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.MentionPairSubstring extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.ModifierWordFeatures extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.NullAntecedentFeatureExtractor extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.PartOfSpeechMentionPair extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.anaphora.TokenFeaturesMentionPair extends Pipe implements Serializable
Package edu.umass.cs.mallet.projects.seg_plus_coref.clustering
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.CitationCluster extends LinkedList implements Serializable
  - Serialized Fields
    - canonicalObj
```
Object canonicalObj
```
    - refNoMeta
```
String refNoMeta
```
    - clusterNoMeta
```
String clusterNoMeta
```
    - startTags
```
String[] startTags
```
    - endTags
```
String[] endTags
```
    - tagWeight
```
double[] tagWeight
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.Cluster extends LinkedHashSet implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.Clustering extends LinkedHashSet implements Serializable
  - Serialized Fields
    - selectVertices
```
List<E> selectVertices
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.GraphClustering extends Clustering implements Serializable
  - Serialized Fields
    - graph
```
salvo.jesus.graph.WeightedGraph graph
```
    - verticesToClusters
```
HashMap<K,V> verticesToClusters
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.KeyCluster extends Cluster implements Serializable
  - Serialized Fields
    - clusterId
```
String clusterId
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.KeyClustering extends Clustering implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.MortonClustering extends Clustering implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.clustering.SGML2FieldsPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - sgmlRegex
```
String sgmlRegex
```
    - sgmlPattern
```
Pattern sgmlPattern
```
    - lexer
```
CharSequenceLexer lexer
```
    - lexerRegex
```
String lexerRegex
```
    - backgroundTag
```
String backgroundTag
```
    - refNoMeta
```
String refNoMeta
```
    - clusterNoMeta
```
String clusterNoMeta
```
    - clusterNoMeta_true
```
String clusterNoMeta_true
```
    - startTags
```
String[] startTags
```
    - endTags
```
String[] endTags
```
    - tagWeight
```
double[] tagWeight
```
    - Source
```
String Source
```
    - TEXT_NO_TAG
```
String TEXT_NO_TAG
```
Package edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.AllLinks extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
      Determines distance between two nodes
    - includePairwiseFeatures
```
boolean includePairwiseFeatures
```
      True if we should include the features from the closest/farthest NodePair
    - minNumNeg
```
int minNumNeg
```
      How many negative links we need to see b/t node and cluster for feature to fire
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.AverageLink extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ClosestSingleLink extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
      Determines distance between two nodes
    - includePairwiseFeatures
```
boolean includePairwiseFeatures
```
      True if we should include the features from the closest NodePair
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ClusterHomogeneity extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ClusterSize extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.FarthestSingleLink extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ForAll extends Pipe implements Serializable
  - Serialized Fields
    - fields
```
String[] fields
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.NNegativeNodes extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
      Determines distance between two nodes
    - n
```
int n
```
      number of negative nodes we must see for this feature to fire
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.NodeClusterPair2FeatureVector extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.PaperClusterPrediction extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ThereExists extends Pipe implements Serializable
  - Serialized Fields
    - fields
```
String[] fields
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.ThereExistsMatch extends Pipe implements Serializable
  - Serialized Fields
    - distanceMeasure
```
com.wcohen.secondstring.StringDistance distanceMeasure
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.VenueClusterPrediction extends Pipe implements Serializable
  - Serialized Fields
    - classifier
```
Classifier classifier
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.condclust.pipe.VenuePaperCluster2FeatureVector extends Pipe implements Serializable
Package edu.umass.cs.mallet.projects.seg_plus_coref.coreference
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.AuthorLastNameEqual extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.AuthorPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.BooktitlePipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.DatePipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.ExactFieldMatchPipe extends Pipe implements Serializable
  - Serialized Fields
    - fields
```
String[] fields
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.FieldStringDistancePipe extends Pipe implements Serializable
  - Serialized Fields
    - distanceMeasure
```
com.wcohen.secondstring.StringDistance distanceMeasure
```
    - fields
```
String[] fields
```
    - featureName
```
String featureName
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.FuchunPipe extends Pipe implements Serializable
  - Serialized Fields
    - default_Max_Dist
```
double default_Max_Dist
```
    - default_Ignore_Dist
```
double default_Ignore_Dist
```
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.GlobalPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - useNBest
```
boolean useNBest
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.GlobalPipeUnSeg extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - useNBest
```
boolean useNBest
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.HeuristicPipe extends Pipe implements Serializable
  - Serialized Fields
    - fields
```
String[] fields
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.InterFieldPipe extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.JournalPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.NodePair2FeatureVector extends Pipe implements Serializable
  - Serialized Fields
    - binary
```
boolean binary
```
    - augmentable
```
boolean augmentable
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.NodePairSaveSource extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.NormalizationPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - startTags
```
String[] startTags
```
    - endTags
```
String[] endTags
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.PageMatchPipe extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.PagesPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.PlainFieldPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - distMetric2
```
com.wcohen.secondstring.StringDistance distMetric2
```
    - threshold
```
double threshold
```
    - useNBest
```
boolean useNBest
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.PublisherPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.RegexPipe extends Pipe implements Serializable
  - Serialized Fields
    - fields
```
String[] fields
```
    - regex
```
String regex
```
    - featureName
```
String featureName
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.SGMLStringDistances extends Pipe implements Serializable
  - Serialized Fields
    - nw
```
com.wcohen.secondstring.AbstractStringDistance nw
```
    - sgmlStartTags
```
String[] sgmlStartTags
```
    - sgmlEndTags
```
String[] sgmlEndTags
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.SplitFieldStringDistancePipe extends Pipe implements Serializable
  - Serialized Fields
    - distanceMeasure
```
com.wcohen.secondstring.StringDistance distanceMeasure
```
    - fields
```
String[] fields
```
    - featureName
```
String featureName
```
    - splitPattern
```
String splitPattern
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.StringDistances extends Pipe implements Serializable
  - Serialized Fields
    - nw
```
com.wcohen.secondstring.AbstractStringDistance nw
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.TechPipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.TitlePipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
    - useNBest
```
boolean useNBest
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.VenueAcronymPipe extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.VenuePipe extends Pipe implements Serializable
  - Serialized Fields
    - distMetric
```
com.wcohen.secondstring.StringDistance distMetric
```
    - threshold
```
double threshold
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.VolumesMatchPipe extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.YearPipe extends Pipe implements Serializable
- Class edu.umass.cs.mallet.projects.seg_plus_coref.coreference.YearsWithinFivePipe extends Pipe implements Serializable

Package edu.umass.cs.mallet.projects.seg_plus_coref.graphs

Class edu.umass.cs.mallet.projects.seg_plus_coref.graphs.Test1 extends JFrame implements Serializable

Serialized Fields

v1
```
salvo.jesus.graph.Vertex v1
```
v2
```
salvo.jesus.graph.Vertex v2
```
v3
```
salvo.jesus.graph.Vertex v3
```
e1
```
salvo.jesus.graph.Edge e1
```
e2
```
salvo.jesus.graph.Edge e2
```
e3
```
salvo.jesus.graph.Edge e3
```
graph
```
salvo.jesus.graph.Graph graph
```

gedit1

salvo.jesus.graph.visual.GraphEditor gedit1

gedit2

salvo.jesus.graph.visual.GraphEditor gedit2

Package edu.umass.cs.mallet.projects.seg_plus_coref.ie
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.POSFeaturesPipe extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - POSModelFile
```
String POSModelFile
```
    - doTag
```
boolean doTag
```
    - doTagBigram
```
boolean doTagBigram
```
    - doTagTrigram
```
boolean doTagTrigram
```
    - doTagWord
```
boolean doTagWord
```
    - POS_On
```
boolean POS_On
```
    - posExtracter
```
IEInterface3 posExtracter
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.TUI_CorefIE.BogusClusterPipe extends Pipe implements Serializable
  - Serialized Fields
    - segmentation
```
TUI_CorefIE.AllClusterSegmentation segmentation
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.TUI_CorefIE.NegativeClusterFeaturePipe extends Pipe implements Serializable
  - Serialized Fields
    - segmentation
```
TUI_CorefIE.AllClusterSegmentation segmentation
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.TUI_CorefIE.NumAppearancesInClusterPipe extends Pipe implements Serializable
  - Serialized Fields
    - segmentation
```
TUI_CorefIE.AllClusterSegmentation segmentation
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.TUI_CorefIE.WordAppearsInAnyClusterPipe extends Pipe implements Serializable
  - Serialized Fields
    - segmentation
```
TUI_CorefIE.AllClusterSegmentation segmentation
```
- Class edu.umass.cs.mallet.projects.seg_plus_coref.ie.TUI_CorefIE.WordOftenAppearsAsPipe extends Pipe implements Serializable
  - Serialized Fields
    - segmentation
```
TUI_CorefIE.AllClusterSegmentation segmentation
```
Package edu.umass.cs.mallet.share.casutton.ner
- Class edu.umass.cs.mallet.share.casutton.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable
  - Serialized Fields
    - saveSource
```
boolean saveSource
```
    - doConjunctions
```
boolean doConjunctions
```
    - doTags
```
boolean doTags
```
    - doPhrases
```
boolean doPhrases
```
    - doSpelling
```
boolean doSpelling
```
    - doDigitCollapses
```
boolean doDigitCollapses
```
    - doDowncasing
```
boolean doDowncasing
```
Package edu.umass.cs.mallet.share.mccallum.ner
- Class edu.umass.cs.mallet.share.mccallum.ner.ConllNer2003Sentence2TokenSequence extends Pipe implements Serializable
  - Serialized Fields
    - saveSource
```
boolean saveSource
```
    - doConjunctions
```
boolean doConjunctions
```
    - doTags
```
boolean doTags
```
    - doPhrases
```
boolean doPhrases
```
    - doSpelling
```
boolean doSpelling
```
    - doDigitCollapses
```
boolean doDigitCollapses
```
    - doDowncasing
```
boolean doDowncasing
```
- Class edu.umass.cs.mallet.share.mccallum.ner.TokenSequenceDocHeader extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
Package edu.umass.cs.mallet.share.upenn.ner
- Class edu.umass.cs.mallet.share.upenn.ner.FeatureWindow extends Pipe implements Serializable
  - Serialized Fields
    - left
```
int left
```
    - right
```
int right
```
- Class edu.umass.cs.mallet.share.upenn.ner.LengthBins extends Pipe implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - bins
```
int[] bins
```
    - binNames
```
String[] binNames
```
- Class edu.umass.cs.mallet.share.upenn.ner.ListMember extends Pipe implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - lexicon
```
Set<E> lexicon
```
    - ignoreCase
```
boolean ignoreCase
```
    - min
```
int min
```
    - max
```
int max
```
- Class edu.umass.cs.mallet.share.upenn.ner.LongRegexMatches extends Pipe implements Serializable
  - Serialized Fields
    - name
```
String name
```
    - regex
```
Pattern regex
```
    - min
```
int min
```
    - max
```
int max
```
- Class edu.umass.cs.mallet.share.upenn.ner.NEPipes extends SerialPipes implements Serializable
Package edu.umass.cs.mallet.share.weili.ner.enron
- Class edu.umass.cs.mallet.share.weili.ner.enron.EnronMessage2TokenSequence extends Pipe implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialization Methods
    - readObject
```
private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException
```
      Throws:
      
      IOException
      
      ClassNotFoundException
    - writeObject
```
private void writeObject(ObjectOutputStream out)
                  throws IOException
```
      Throws:
      
      IOException
  - Serialized Fields
    - saveSource
```
boolean saveSource
```
    - headerPersonNames
```
HashSet<E> headerPersonNames
```

Package gnu.trove

Class gnu.trove.TDoubleArrayList extends Object implements Serializable
- Serialized Fields
  - _data
```
double[] _data
```
    the data of the list
  - _pos
```
int _pos
```
    the index after the last entry in the list

Class gnu.trove.TDoubleDoubleHashMap extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TDoubleFloatHashMap extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TDoubleHash extends TPrimitiveHash implements Serializable
- Serialized Fields
  - hashingStrategy
```
TDoubleHashingStrategy hashingStrategy
```
    strategy used to hash values in this collection

Class gnu.trove.TDoubleHashSet extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TDoubleIntHashMap extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TDoubleLongHashMap extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TDoubleObjectHashMap extends TDoubleHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatArrayList extends Object implements Serializable
- Serialized Fields
  - _data
```
float[] _data
```
    the data of the list
  - _pos
```
int _pos
```
    the index after the last entry in the list

Class gnu.trove.TFloatDoubleHashMap extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatFloatHashMap extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatHash extends TPrimitiveHash implements Serializable
- Serialized Fields
  - hashingStrategy
```
TFloatHashingStrategy hashingStrategy
```
    strategy used to hash values in this collection

Class gnu.trove.TFloatHashSet extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatIntHashMap extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatLongHashMap extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TFloatObjectHashMap extends TFloatHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.THashMap extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.THashSet extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntArrayList extends Object implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntDoubleHashMap extends TIntHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntFloatHashMap extends TIntHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntHash extends TPrimitiveHash implements Serializable
- Serialized Fields
  - hashingStrategy
```
TIntHashingStrategy hashingStrategy
```
    strategy used to hash values in this collection

Class gnu.trove.TIntHashSet extends TIntHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntIntHashMap extends TIntHash implements Serializable

serialVersionUID:

-4837492221973457293L
- Serialization Methods
  - readObject
```
private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException
```
    Throws:
    
    IOException
    
    ClassNotFoundException
  - writeObject
```
private void writeObject(ObjectOutputStream stream)
                  throws IOException
```
    Throws:
    
    IOException
- Serialized Fields
  - defaultValue
```
int defaultValue
```
    Value returned by get() when key not in map.

Class gnu.trove.TIntLongHashMap extends TIntHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TIntObjectHashMap extends TIntHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLinkableAdaptor extends Object implements Serializable
- Serialized Fields
  - _previous
```
TLinkable _previous
```
  - _next
```
TLinkable _next
```
Class gnu.trove.TLinkedList extends AbstractSequentialList implements Serializable
- Serialized Fields
  - _head
```
TLinkable _head
```
    the head of the list
  - _tail
```
TLinkable _tail
```
    the tail of the list
  - _size
```
int _size
```
    the number of elements in the list
Class gnu.trove.TLongArrayList extends Object implements Serializable
- Serialized Fields
  - _data
```
long[] _data
```
    the data of the list
  - _pos
```
int _pos
```
    the index after the last entry in the list

Class gnu.trove.TLongDoubleHashMap extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLongFloatHashMap extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLongHash extends TPrimitiveHash implements Serializable
- Serialized Fields
  - hashingStrategy
```
TLongHashingStrategy hashingStrategy
```
    strategy used to hash values in this collection

Class gnu.trove.TLongHashSet extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLongIntHashMap extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLongLongHashMap extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TLongObjectHashMap extends TLongHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TObjectDoubleHashMap extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TObjectFloatHashMap extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TObjectHash extends THash implements Serializable
- Serialized Fields
  - hashingStrategy
```
TObjectHashingStrategy hashingStrategy
```
    the strategy used to hash objects in this collection.
Class gnu.trove.TObjectIdentityHashingStrategy extends Object implements Serializable

Class gnu.trove.TObjectIntHashMap extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Class gnu.trove.TObjectLongHashMap extends TObjectHash implements Serializable

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Throws:: IOException; ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Throws:: IOException

Serialized Form

Package edu.umass.cs.mallet.base.classify

Class edu.umass.cs.mallet.base.classify.AdaBoostM2 extends Classifier implements Serializable

Serialized Fields

weakClassifiers

alphas

Class edu.umass.cs.mallet.base.classify.BalancedWinnow extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

m_weights

Class edu.umass.cs.mallet.base.classify.BalancedWinnowTrainer extends ClassifierTrainer implements Serializable

Serialized Fields

m_epsilon

m_delta

m_maxIterations

m_coolingRate

m_weights

Class edu.umass.cs.mallet.base.classify.C45 extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

m_root

Class edu.umass.cs.mallet.base.classify.C45.Node extends Object implements Serializable

Serialized Fields

m_gainRatio

m_ilist

m_instIndices

m_dataDict

m_minNumInsts

m_parent

m_leftChild

m_rightChild

Class edu.umass.cs.mallet.base.classify.DecisionTree extends Classifier implements Serializable

Serialized Fields

root

addFeaturesClassEntropyThreshold

Class edu.umass.cs.mallet.base.classify.DecisionTree.Node extends Object implements Serializable

Serialized Fields

featureIndex

infoGain

ilist

dictionary

labelEntropy

labeling

parent

child0

child1

name

Class edu.umass.cs.mallet.base.classify.MaxEnt extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

parameters

defaultFeatureIndex

featureSelection

perClassFeatureSelection

Class edu.umass.cs.mallet.base.classify.MaxEntTrainer extends ClassifierTrainer implements Serializable

Serialized Fields

numGetValueCalls

numGetValueGradientCalls

numIterations

usingMultiConditionalTraining

usingHyperbolicPrior

gaussianPriorVariance

hyperbolicPriorSlope

hyperbolicPriorSharpness

maximizerClass

Class edu.umass.cs.mallet.base.classify.MCMaxEnt extends Classifier implements Serializable

Serialization Methods

readObject

writeObject

Serialized Fields

parameters

defaultFeatureIndex

featureSelection

perClassFeatureSelection