Index (JCoRe Lingscope AE 2.6.1 API)

A B C D E F G I L M N O P R S T U W
All Classes All Packages

A

AbnerTokenizer - Class in lingscope.algorithms
AbnerTokenizer() - Constructor for class lingscope.algorithms.AbnerTokenizer
AnnotatedFilesMerger - Class in lingscope.drivers: Merges two annotated files.
AnnotatedFilesMerger() - Constructor for class lingscope.drivers.AnnotatedFilesMerger
AnnotatedSentence - Class in lingscope.structures: Represents an AnnotatedSentence
AnnotatedSentence() - Constructor for class lingscope.structures.AnnotatedSentence: Initializes an AnnotatedSentence object
AnnotatedSentence(String) - Constructor for class lingscope.structures.AnnotatedSentence: Creates an object of AnnotatedSentence with the given rawText
AnnotatedSentencesIO - Class in lingscope.io: Reads and writes annotated sentences
AnnotatedSentencesIO() - Constructor for class lingscope.io.AnnotatedSentencesIO
annotateSentence(String, boolean) - Method in class lingscope.algorithms.Annotator
annotateSentence(String, boolean) - Method in class lingscope.algorithms.BaselineCueAnnotator
annotateSentence(String, boolean) - Method in class lingscope.algorithms.BaselineScopeAnnotator
annotateSentence(String, boolean) - Method in class lingscope.algorithms.CrfAnnotator
annotateSentence(String, boolean) - Method in class lingscope.algorithms.NegexCueAnnotator
annotateSentence(String, boolean) - Method in class lingscope.algorithms.NegexScopeAnnotator
annotateSentences(Annotator, List<String>, boolean) - Static method in class lingscope.drivers.SentenceTagger
AnnotationComparer - Class in lingscope.algorithms: Compares two annotations or two annotation files
AnnotationComparer(int) - Constructor for class lingscope.algorithms.AnnotationComparer
AnnotationComparerDriver - Class in lingscope.drivers: Compares annotations between a gold and test file
AnnotationComparerDriver() - Constructor for class lingscope.drivers.AnnotationComparerDriver
Annotator - Class in lingscope.algorithms
Annotator(String, String, String) - Constructor for class lingscope.algorithms.Annotator

B

BaselineAnnotator - Class in lingscope.algorithms: The baseline annotator
BaselineAnnotator(String, String, String) - Constructor for class lingscope.algorithms.BaselineAnnotator
BaselineCueAnnotator - Class in lingscope.algorithms
BaselineCueAnnotator(String, String, String) - Constructor for class lingscope.algorithms.BaselineCueAnnotator
BaselineDriver - Class in lingscope.drivers
BaselineDriver() - Constructor for class lingscope.drivers.BaselineDriver
BaselineScopeAnnotator - Class in lingscope.algorithms
BaselineScopeAnnotator(String, String, String, boolean, boolean) - Constructor for class lingscope.algorithms.BaselineScopeAnnotator
beginTag - Variable in class lingscope.algorithms.Annotator

C

compareAnnotationFiles(String, String) - Method in class lingscope.algorithms.AnnotationComparer
compareAnnotations(AnnotatedSentence, AnnotatedSentence) - Method in class lingscope.algorithms.AnnotationComparer
CrfAnnotator - Class in lingscope.algorithms: A CRF based annotator
CrfAnnotator(String, String, String) - Constructor for class lingscope.algorithms.CrfAnnotator
CrfDriver - Class in lingscope.drivers: Driver to mark scope or cue in a file
CrfDriver() - Constructor for class lingscope.drivers.CrfDriver
CUE_INTER - Static variable in class lingscope.drivers.SentenceTagger
CUE_START - Static variable in class lingscope.drivers.SentenceTagger
CueAndPosFilesMerger - Class in lingscope.drivers: Merges two files, one containing pos tags and the other containing annotated cues
CueAndPosFilesMerger() - Constructor for class lingscope.drivers.CueAndPosFilesMerger

D

de.julielab.jcore.ae.lingscope - package de.julielab.jcore.ae.lingscope

E

endPattern - Variable in class lingscope.algorithms.BaselineScopeAnnotator

F

FileOperations - Class in generalutils
FileOperations() - Constructor for class generalutils.FileOperations

G

generalutils - package generalutils
GenNegEx - Class in lingscope.algorithms.negex: Author: Imre Solti Date: 09/15/2008 Modified: 04/15/2009 Changed to specifications of test kit and discussions with WC and PH.
GenNegEx() - Constructor for class lingscope.algorithms.negex.GenNegEx
getAccuracies() - Method in class lingscope.algorithms.AnnotationComparer
getAccuracy(double, double, double, double) - Method in class lingscope.algorithms.AnnotationComparer
getAnnotator(String, String) - Static method in class lingscope.drivers.SentenceTagger: Gets the Annotator from the given classifier and mark type
getCue(String, List<String>, String, String, String) - Method in class lingscope.algorithms.negex.GenNegEx
getCueWords(String, String, String, String) - Static method in class lingscope.algorithms.BaselineAnnotator: Gets the set of cue word phrases in the given sentence.
getFScore(double, double) - Method in class lingscope.algorithms.AnnotationComparer
getFScores(double[], double[]) - Method in class lingscope.algorithms.AnnotationComparer
getIsAnnotatedTags() - Method in class lingscope.structures.AnnotatedSentence: Gets the is annotated tags for this AnnotatedSentence
getPerfectAccuracies() - Method in class lingscope.algorithms.AnnotationComparer
getPerfectAccuracy(double, double) - Method in class lingscope.algorithms.AnnotationComparer
getPrecision(double, double) - Method in class lingscope.algorithms.AnnotationComparer
getPrecisions() - Method in class lingscope.algorithms.AnnotationComparer
getPreviousRunScope() - Method in class lingscope.algorithms.negex.GenNegEx
getRawText() - Method in class lingscope.structures.AnnotatedSentence: Gets the raw text (with tags) for this AnnotatedSentence
getRecall(double, double) - Method in class lingscope.algorithms.AnnotationComparer
getRecalls() - Method in class lingscope.algorithms.AnnotationComparer
getScope(String, List<String>, String, String, String) - Method in class lingscope.algorithms.negex.GenNegEx
getSentenceText() - Method in class lingscope.structures.AnnotatedSentence: Gets the sentence text (without the tags)
getStringList(String, boolean) - Static method in class lingscope.drivers.SentenceTagger: Gets the list of sentences in string format from the given inputFile.
getStringListFromAnnotatedSentences(List<AnnotatedSentence>) - Static method in class lingscope.drivers.SentenceTagger: Given a list of annotated sentences, return a list where the annotated sentences are replaced with strings
getTaggedSentence(String, String, boolean) - Static method in class lingscope.drivers.PosTaggerDriver: Gets the equivalent POS sentence for the given sentenceToTag
getTags() - Method in class lingscope.structures.AnnotatedSentence: Gets the tags in this AnnotatedSentence
getWords() - Method in class lingscope.structures.AnnotatedSentence: Gets the words in this AnnotatedSentence

I

initialize(UimaContext) - Method in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator: This method is called a single time by the framework at component creation.
interTag - Variable in class lingscope.algorithms.Annotator
isTargetNegated(String, boolean, String) - Method in class lingscope.algorithms.Annotator: Checks if the given target phrase is negated in the given sentence.

L

LikelihoodUtils - Class in de.julielab.jcore.ae.lingscope
LikelihoodUtils() - Constructor for class de.julielab.jcore.ae.lingscope.LikelihoodUtils
lingscope.algorithms - package lingscope.algorithms
lingscope.algorithms.negex - package lingscope.algorithms.negex
lingscope.drivers - package lingscope.drivers
lingscope.io - package lingscope.io
lingscope.structures - package lingscope.structures
LingscopePosAnnotator - Class in de.julielab.jcore.ae.lingscope
LingscopePosAnnotator() - Constructor for class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator
loadAnnotator(InputStream) - Method in class lingscope.algorithms.Annotator
loadAnnotator(InputStream) - Method in class lingscope.algorithms.BaselineAnnotator
loadAnnotator(InputStream) - Method in class lingscope.algorithms.CrfAnnotator
loadAnnotator(InputStream) - Method in class lingscope.algorithms.NegexAnnotator
loadAnnotator(String) - Method in class lingscope.algorithms.Annotator
loadLikelihoodDict(String, Map<String, String>) - Static method in class de.julielab.jcore.ae.lingscope.LikelihoodUtils: Reads the dictionary the maps negation or hedge cues to a likelihood.

M

main(String[]) - Static method in class lingscope.drivers.AnnotatedFilesMerger
main(String[]) - Static method in class lingscope.drivers.AnnotationComparerDriver
main(String[]) - Static method in class lingscope.drivers.BaselineDriver
main(String[]) - Static method in class lingscope.drivers.CrfDriver
main(String[]) - Static method in class lingscope.drivers.CueAndPosFilesMerger
main(String[]) - Static method in class lingscope.drivers.ModelTrainer
main(String[]) - Static method in class lingscope.drivers.NegexDriver
main(String[]) - Static method in class lingscope.drivers.PosTaggerDriver
main(String[]) - Static method in class lingscope.drivers.SentencePosTagger
main(String[]) - Static method in class lingscope.drivers.SentenceTagger
merge(List<AnnotatedSentence>, List<String>, boolean) - Static method in class lingscope.drivers.CueAndPosFilesMerger: Merges the cueSentences and posSentences
merge(AnnotatedSentence, String, boolean) - Static method in class lingscope.drivers.CueAndPosFilesMerger
merge(AnnotatedSentence, AnnotatedSentence) - Static method in class lingscope.drivers.AnnotatedFilesMerger: Merges the given wordsSentence and the given tagsSentence
ModelTrainer - Class in lingscope.drivers: Driver to train a model file.
ModelTrainer() - Constructor for class lingscope.drivers.ModelTrainer

N

negCheck(String, String, ArrayList, boolean) - Method in class lingscope.algorithms.negex.GenNegEx
negex - Variable in class lingscope.algorithms.NegexAnnotator
NegexAnnotator - Class in lingscope.algorithms: Annotates negation using Negex
NegexAnnotator(String, String, String) - Constructor for class lingscope.algorithms.NegexAnnotator
NegexCueAnnotator - Class in lingscope.algorithms
NegexCueAnnotator(String, String, String) - Constructor for class lingscope.algorithms.NegexCueAnnotator
NegexDriver - Class in lingscope.drivers: Runs the annotators
NegexDriver() - Constructor for class lingscope.drivers.NegexDriver
NegexScopeAnnotator - Class in lingscope.algorithms
NegexScopeAnnotator(String, String, String) - Constructor for class lingscope.algorithms.NegexScopeAnnotator
nonScopeTag - Static variable in class lingscope.structures.AnnotatedSentence

O

OTHER - Static variable in class lingscope.drivers.SentenceTagger
otherTag - Variable in class lingscope.algorithms.Annotator

P

PARAM_CUE_MODEL - Static variable in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator
PARAM_IS_NEGATION_ANNOTATOR - Static variable in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator
PARAM_LIKELIHOOD_DICT_PATH - Static variable in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator: String parameter indicating path to likelihood dictionary (One entry per line; Entries consist of tab-separated lemmatized likelihood indicators and assigned likelihood category)
PARAM_SCOPE_MODEL - Static variable in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator
phrases - Variable in class lingscope.algorithms.BaselineAnnotator
PosTagger - Class in lingscope.algorithms: Part of speech tagger
PosTagger(String) - Constructor for class lingscope.algorithms.PosTagger: Creates an instance of POS tagger by loading the given grammar file
PosTaggerDriver - Class in lingscope.drivers: Driver for the Part of Speech tagger.
PosTaggerDriver() - Constructor for class lingscope.drivers.PosTaggerDriver
printStats() - Method in class lingscope.algorithms.AnnotationComparer
process(JCas) - Method in class de.julielab.jcore.ae.lingscope.LingscopePosAnnotator: This method is called for each document going through the component.
processRawText(String) - Method in class lingscope.structures.AnnotatedSentence: Processes the given raw text and extracts tags from it

R

read(String) - Static method in class lingscope.io.AnnotatedSentencesIO: Reads and returns the list of AnnotatedSentence from the given file
readFile(String) - Static method in class generalutils.FileOperations
replaceWordsWithPos(String, boolean) - Method in class lingscope.algorithms.PosTagger: Takes a sentence as input and returns list of POS tags associated with each word in the sentence
reset() - Method in class lingscope.algorithms.AnnotationComparer: Resets the values for the comparer
rules - Variable in class lingscope.algorithms.NegexAnnotator

S

SCOPE_INTER - Static variable in class lingscope.drivers.SentenceTagger
SCOPE_START - Static variable in class lingscope.drivers.SentenceTagger
SentencePosTagger - Class in lingscope.drivers: Use this sentence tagger when using a model that tags POS
SentencePosTagger() - Constructor for class lingscope.drivers.SentencePosTagger
SentenceTagger - Class in lingscope.drivers: Tags scope or cue in a single sentence
SentenceTagger() - Constructor for class lingscope.drivers.SentenceTagger
serializeAnnotator(String, String) - Method in class lingscope.algorithms.Annotator
serializeAnnotator(String, String) - Method in class lingscope.algorithms.BaselineAnnotator
serializeAnnotator(String, String) - Method in class lingscope.algorithms.CrfAnnotator
serializeAnnotator(String, String) - Method in class lingscope.algorithms.NegexAnnotator
Sorter - Class in lingscope.algorithms.negex
Sorter() - Constructor for class lingscope.algorithms.negex.Sorter
sortRules(List<String>) - Method in class lingscope.algorithms.negex.Sorter
splitTermsByPunctuation(String) - Static method in class lingscope.algorithms.AbnerTokenizer: Takes an input and splits the sentence by punctuations and spaces, then stitches it back together with a space and returns

T

tag(Annotator, String, boolean) - Static method in class lingscope.drivers.SentenceTagger: Tags the given sentence with the given annotator
tagNegation(String, List<String>) - Method in class lingscope.algorithms.negex.GenNegEx
tagSentence(String, String, boolean, Annotator, Annotator) - Static method in class lingscope.drivers.SentencePosTagger: Tags the given sentence
tokenize(String) - Static method in class lingscope.algorithms.AbnerTokenizer: Take raw text apply ABNER's built-in tokenization on it.

U

usage() - Static method in class lingscope.drivers.ModelTrainer: Prints the usage for the model trainer
usage() - Static method in class lingscope.drivers.SentencePosTagger
usage() - Static method in class lingscope.drivers.SentenceTagger: Prints the usage for the sentence tagger

W

write(String, List<AnnotatedSentence>) - Static method in class lingscope.io.AnnotatedSentencesIO: Writes the given list of annotated sentences to the given fileToWrite
writeFile(String, List<String>) - Static method in class generalutils.FileOperations

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