de.julielab.jcore.reader.ign

Class IGNReader

java.lang.Object

org.apache.uima.resource.Resource_ImplBase

org.apache.uima.resource.ConfigurableResource_ImplBase

org.apache.uima.collection.CollectionReader_ImplBase

de.julielab.jcore.reader.ign.IGNReader

All Implemented Interfaces:

org.apache.uima.collection.base_cpm.BaseCollectionReader, org.apache.uima.collection.CollectionReader, org.apache.uima.resource.ConfigurableResource, org.apache.uima.resource.Resource

public class IGNReader
extends org.apache.uima.collection.CollectionReader_ImplBase

The IGNReader reads corpus files in BioC-format.
There are XML files comprising the actual text (as well as passage and sentence annotations) and there are separate XML files comprising the annotations.

Author:

engelmann

Field Summary

Fields

Modifier and Type	Field and Description
static String	PARAM_INPUTDIR_ANNO String parameter indicating path to the directory containing files in BioC-format that comprise the annotations.
static String	PARAM_INPUTDIR_TEXT String parameter indicating path to the directory containing files in BioC-format that comprise the actual text.
static String	PUBLICATION_DATES_FILE optional Parameter providing the file path to a file mapping the article ids to the corresponding publication years

Fields inherited from interface org.apache.uima.resource.Resource

PARAM_AGGREGATE_SOFA_MAPPINGS, PARAM_CONFIG_MANAGER, PARAM_CONFIG_PARAM_SETTINGS, PARAM_EXTERNAL_OVERRIDE_SETTINGS, PARAM_PERFORMANCE_TUNING_SETTINGS, PARAM_RESOURCE_MANAGER, PARAM_UIMA_CONTEXT

Constructor Summary

Constructors

Constructor and Description
IGNReader()

Method Summary

Modifier and Type	Method and Description
void	close()
void	getNext(org.apache.uima.cas.CAS aCas)
org.apache.uima.util.Progress[]	getProgress()
boolean	hasNext()
void	initialize()

Methods inherited from class org.apache.uima.collection.CollectionReader_ImplBase

destroy, getCasInitializer, getProcessingResourceMetaData, initialize, isConsuming, reconfigure, setCasInitializer, typeSystemInit

Methods inherited from class org.apache.uima.resource.ConfigurableResource_ImplBase

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from class org.apache.uima.resource.Resource_ImplBase

getCasManager, getLogger, getMetaData, getRelativePathResolver, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger, setMetaData

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.apache.uima.resource.ConfigurableResource

getConfigParameterValue, getConfigParameterValue, setConfigParameterValue, setConfigParameterValue

Methods inherited from interface org.apache.uima.resource.Resource

getLogger, getMetaData, getResourceManager, getUimaContext, getUimaContextAdmin, setLogger

Field Detail

PARAM_INPUTDIR_TEXT

public static final String PARAM_INPUTDIR_TEXT

String parameter indicating path to the directory containing files in BioC-format that comprise the actual text.

See Also:

Constant Field Values

PARAM_INPUTDIR_ANNO

public static final String PARAM_INPUTDIR_ANNO

String parameter indicating path to the directory containing files in BioC-format that comprise the annotations.

See Also:

Constant Field Values

PUBLICATION_DATES_FILE

public static final String PUBLICATION_DATES_FILE

optional Parameter providing the file path to a file mapping the article ids to the corresponding publication years

See Also:

Constant Field Values

Constructor Detail

IGNReader

public IGNReader()

Method Detail

initialize

public void initialize()
                throws org.apache.uima.resource.ResourceInitializationException

Overrides:

initialize in class org.apache.uima.collection.CollectionReader_ImplBase

Throws:

org.apache.uima.resource.ResourceInitializationException

getNext

public void getNext(org.apache.uima.cas.CAS aCas)
             throws IOException,
                    org.apache.uima.collection.CollectionException

Throws:

IOException

org.apache.uima.collection.CollectionException

hasNext

public boolean hasNext()
                throws IOException,
                       org.apache.uima.collection.CollectionException

Throws:

IOException

org.apache.uima.collection.CollectionException

getProgress

public org.apache.uima.util.Progress[] getProgress()

close

public void close()
           throws IOException

Throws:

IOException