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B

BioCCollectionWriter - Class in de.julielab.jcore.consumer.gnp

Writes a collection of BioC documents into a single file.

BioCCollectionWriter(int, Path) - Constructor for class de.julielab.jcore.consumer.gnp.BioCCollectionWriter

BioCDocumentPopulator - Class in de.julielab.jcore.consumer.gnp

Extracts text passages from the CAS and adds them to a new BioCDocument.

BioCDocumentPopulator(boolean, String) - Constructor for class de.julielab.jcore.consumer.gnp.BioCDocumentPopulator

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collectionProcessComplete() - Method in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

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de.julielab.jcore.consumer.gnp - package de.julielab.jcore.consumer.gnp

G

GNormPlusFormatWriter - Class in de.julielab.jcore.consumer.gnp

GNormPlusFormatWriter() - Constructor for class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

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initialize(UimaContext) - Method in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

This method is called a single time by the framework at component creation.

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PARAM_ADD_GENES - Static variable in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

PARAM_BASE_DIR - Static variable in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

PARAM_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

PARAM_NUM_DOCS_PER_FILE - Static variable in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

PARAM_NUM_FILES_PER_DIR - Static variable in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

populate(JCas) - Method in class de.julielab.jcore.consumer.gnp.BioCDocumentPopulator

process(JCas) - Method in class de.julielab.jcore.consumer.gnp.GNormPlusFormatWriter

This method is called for each document going through the component.

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writeBioCCollection(BioCCollection) - Method in class de.julielab.jcore.consumer.gnp.BioCCollectionWriter

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