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C

createEmptyJulieLabBioCCollection() - Static method in class de.julielab.jcore.ae.gnp.GNormPlusProcessing

D

de.julielab.jcore.ae.gnp - package de.julielab.jcore.ae.gnp

de.julielab.jcore.multiplier.gnp - package de.julielab.jcore.multiplier.gnp

DESC_FOCUS_SPECIES - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

DESC_GNP_SETUP_FILE - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

DESC_INPUT_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

DESC_OUTPUT_DIR - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

DESC_OUTPUT_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

DESC_USE_EXISTING_GENES - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

G

GNormPlusAnnotator - Class in de.julielab.jcore.ae.gnp

GNormPlusAnnotator() - Constructor for class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

GNormPlusBioCMultiplier - Class in de.julielab.jcore.multiplier.gnp

GNormPlusBioCMultiplier() - Constructor for class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

GNormPlusMultiplierLogic - Class in de.julielab.jcore.multiplier.gnp

GNormPlusMultiplierLogic(UimaContext, BioCDocumentPopulator, Supplier<Boolean>, Supplier<JCas>, Supplier<JCas>, boolean) - Constructor for class de.julielab.jcore.multiplier.gnp.GNormPlusMultiplierLogic

GNormPlusPMCDBMultiplier - Class in de.julielab.jcore.multiplier.gnp

GNormPlusPMCDBMultiplier() - Constructor for class de.julielab.jcore.multiplier.gnp.GNormPlusPMCDBMultiplier

GNormPlusProcessing - Class in de.julielab.jcore.ae.gnp

GNormPlusProcessing() - Constructor for class de.julielab.jcore.ae.gnp.GNormPlusProcessing

GNormPlusXmiDBMultiplier - Class in de.julielab.jcore.multiplier.gnp

GNormPlusXmiDBMultiplier() - Constructor for class de.julielab.jcore.multiplier.gnp.GNormPlusXmiDBMultiplier

GNormPlusXMLDBMultiplier - Class in de.julielab.jcore.multiplier.gnp

GNormPlusXMLDBMultiplier() - Constructor for class de.julielab.jcore.multiplier.gnp.GNormPlusXMLDBMultiplier

H

hasNext() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

hasNext() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusMultiplierLogic

hasNext() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusPMCDBMultiplier

hasNext() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXmiDBMultiplier

hasNext() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXMLDBMultiplier

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initialize(UimaContext) - Method in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

This method is called a single time by the framework at component creation.

initialize(UimaContext) - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

initialize(UimaContext) - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusPMCDBMultiplier

initialize(UimaContext) - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXmiDBMultiplier

initialize(UimaContext) - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXMLDBMultiplier

initializeGNormPlus(String, String) - Static method in class de.julielab.jcore.ae.gnp.GNormPlusProcessing

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next() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

next() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusMultiplierLogic

next() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusPMCDBMultiplier

next() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXmiDBMultiplier

next() - Method in class de.julielab.jcore.multiplier.gnp.GNormPlusXMLDBMultiplier

P

PARAM_ADD_GENES - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

PARAM_FOCUS_SPECIES - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

PARAM_FOCUS_SPECIES - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

PARAM_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

PARAM_GNP_SETUP_FILE - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

PARAM_GNP_SETUP_FILE - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

PARAM_INPUT_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

PARAM_OUTPUT_DIR - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

PARAM_OUTPUT_DIR - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

PARAM_OUTPUT_GENE_TYPE_NAME - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

PARAM_SKIP_UNCHANGED_DOCUMENTS - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusPMCDBMultiplier

PARAM_SKIP_UNCHANGED_DOCUMENTS - Static variable in class de.julielab.jcore.multiplier.gnp.GNormPlusXMLDBMultiplier

PARAM_USE_EXISTING_GENE_ANNOTATIONS - Static variable in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

process(JCas) - Method in class de.julielab.jcore.ae.gnp.GNormPlusAnnotator

This method is called for each document going through the component.

processWithGNormPlus(BioCCollection, String) - Static method in class de.julielab.jcore.ae.gnp.GNormPlusProcessing

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