Package de.julielab.jcore.multiplier.gnp

Class GNormPlusBioCMultiplier

java.lang.Object

org.apache.uima.analysis_component.AnalysisComponent_ImplBase

org.apache.uima.analysis_component.JCasMultiplier_ImplBase

de.julielab.jcore.reader.GNormPlusFormatMultiplier

de.julielab.jcore.multiplier.gnp.GNormPlusBioCMultiplier

All Implemented Interfaces:

org.apache.uima.analysis_component.AnalysisComponent

public class GNormPlusBioCMultiplier
extends de.julielab.jcore.reader.GNormPlusFormatMultiplier

Field Summary

Fields

Modifier and Type	Field	Description
static String	PARAM_ADD_GENES
static String	PARAM_FOCUS_SPECIES
static String	PARAM_GENE_TYPE_NAME
static String	PARAM_GNP_SETUP_FILE
static String	PARAM_OUTPUT_DIR

Fields inherited from class de.julielab.jcore.reader.GNormPlusFormatMultiplier

PARAM_COSTOSYS_CONFIG, PARAM_OUTPUT_GENE_TYPE_NAME, PARAM_XMI_DOCUMENTS_TABLE

Constructor Summary

Constructors

Constructor	Description
GNormPlusBioCMultiplier()

Method Summary

Modifier and Type	Method	Description
boolean	hasNext()
void	initialize(org.apache.uima.UimaContext aContext)
org.apache.uima.cas.AbstractCas	next()

Methods inherited from class de.julielab.jcore.reader.GNormPlusFormatMultiplier

process

Methods inherited from class org.apache.uima.analysis_component.JCasMultiplier_ImplBase

getCasInstancesRequired, getEmptyJCas, getRequiredCasInterface, process

Methods inherited from class org.apache.uima.analysis_component.AnalysisComponent_ImplBase

batchProcessComplete, collectionProcessComplete, destroy, getContext, getResultSpecification, reconfigure, setResultSpecification

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

PARAM_ADD_GENES

public static final String PARAM_ADD_GENES

See Also:

Constant Field Values

PARAM_GENE_TYPE_NAME

public static final String PARAM_GENE_TYPE_NAME

See Also:

Constant Field Values

PARAM_OUTPUT_DIR

public static final String PARAM_OUTPUT_DIR

See Also:

Constant Field Values

PARAM_GNP_SETUP_FILE

public static final String PARAM_GNP_SETUP_FILE

See Also:

Constant Field Values

PARAM_FOCUS_SPECIES

public static final String PARAM_FOCUS_SPECIES

See Also:

Constant Field Values

Constructor Detail

GNormPlusBioCMultiplier

public GNormPlusBioCMultiplier()

Method Detail

initialize

public void initialize(org.apache.uima.UimaContext aContext)
                throws org.apache.uima.resource.ResourceInitializationException

Specified by:

initialize in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

initialize in class de.julielab.jcore.reader.GNormPlusFormatMultiplier

Throws:

org.apache.uima.resource.ResourceInitializationException

hasNext

public boolean hasNext()

Specified by:

hasNext in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

hasNext in class de.julielab.jcore.reader.GNormPlusFormatMultiplier

next

public org.apache.uima.cas.AbstractCas next()
                                     throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Specified by:

next in interface org.apache.uima.analysis_component.AnalysisComponent

Overrides:

next in class de.julielab.jcore.reader.GNormPlusFormatMultiplier

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException