Package de.julielab.jcore.ae.gnp

Class GNormPlusProcessing

java.lang.Object

de.julielab.jcore.ae.gnp.GNormPlusProcessing

public class GNormPlusProcessing
extends Object

Constructor Summary

Constructors

Constructor	Description
GNormPlusProcessing()

Method Summary

Modifier and Type	Method	Description
static com.pengyifan.bioc.BioCCollection	createEmptyJulieLabBioCCollection()
static void	initializeGNormPlus(String setupFileResourcePath, String focusSpecies)
static Path	processWithGNormPlus(com.pengyifan.bioc.BioCCollection bioCCollection, String outputDirectory)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GNormPlusProcessing

public GNormPlusProcessing()

Method Detail

initializeGNormPlus

public static void initializeGNormPlus(String setupFileResourcePath,
                                       String focusSpecies)
                                throws IOException

Throws:

IOException

createEmptyJulieLabBioCCollection

public static com.pengyifan.bioc.BioCCollection createEmptyJulieLabBioCCollection()

processWithGNormPlus

public static Path processWithGNormPlus(com.pengyifan.bioc.BioCCollection bioCCollection,
                                        String outputDirectory)
                                 throws org.apache.uima.analysis_engine.AnalysisEngineProcessException

Parameters:

bioCCollection -

outputDirectory -

Returns:

The path of the GNormPlus output file.

Throws:

org.apache.uima.analysis_engine.AnalysisEngineProcessException