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B

BioSemEventAnnotator - Class in de.julielab.jcore.ae.biosem

BioSemEventAnnotator() - Constructor for class de.julielab.jcore.ae.biosem.BioSemEventAnnotator

C

closeDatabase() - Method in interface de.julielab.jcore.ae.biosem.DBUtilsProvider

closeDatabase() - Method in class de.julielab.jcore.ae.biosem.DBUtilsProviderImpl

CONFIG_TRAINED_DB - Static variable in class de.julielab.jcore.ae.biosem.DBUtilsProviderImpl

D

DBUtilsProvider - Interface in de.julielab.jcore.ae.biosem

DBUtilsProviderImpl - Class in de.julielab.jcore.ae.biosem

DBUtilsProviderImpl() - Constructor for class de.julielab.jcore.ae.biosem.DBUtilsProviderImpl

de.julielab.jcore.ae.biosem - package de.julielab.jcore.ae.biosem

destroy() - Method in class de.julielab.jcore.ae.biosem.BioSemEventAnnotator

G

getTrainedDatabase() - Method in interface de.julielab.jcore.ae.biosem.DBUtilsProvider

getTrainedDatabase() - Method in class de.julielab.jcore.ae.biosem.DBUtilsProviderImpl

I

initialize(UimaContext) - Method in class de.julielab.jcore.ae.biosem.BioSemEventAnnotator

L

load(DataResource) - Method in class de.julielab.jcore.ae.biosem.DBUtilsProviderImpl

P

process(JCas) - Method in class de.julielab.jcore.ae.biosem.BioSemEventAnnotator

R

RESOURCE_TRAINED_DB - Static variable in class de.julielab.jcore.ae.biosem.BioSemEventAnnotator

U

UnknownProteinIdException - Exception in de.julielab.jcore.ae.biosem

Sometimes, BioSem returns protein IDs which it has not been delivered.

UnknownProteinIdException() - Constructor for exception de.julielab.jcore.ae.biosem.UnknownProteinIdException

UnknownProteinIdException(String, Throwable, boolean, boolean) - Constructor for exception de.julielab.jcore.ae.biosem.UnknownProteinIdException

UnknownProteinIdException(String, Throwable) - Constructor for exception de.julielab.jcore.ae.biosem.UnknownProteinIdException

UnknownProteinIdException(String) - Constructor for exception de.julielab.jcore.ae.biosem.UnknownProteinIdException

UnknownProteinIdException(Throwable) - Constructor for exception de.julielab.jcore.ae.biosem.UnknownProteinIdException

B C D G I L P R U