A B C D F G H I M O P R S T
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A

ABSTRACT_FILE_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

ANNOTATION_FILE_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

AnnotationFileMapper - Class in de.julielab.jcore.reader.bionlpformat.utils

//TODO describe purpose of class

AnnotationFileMapper() - Constructor for class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

AnnotationFileMapper_Med - Class in de.julielab.jcore.reader.bionlpformat.utils

AnnotationFileMapper_Med() - Constructor for class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper_Med

AnnotationFileMapper_Seg - Class in de.julielab.jcore.reader.bionlpformat.utils

AnnotationFileMapper_Seg() - Constructor for class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper_Seg

B

BIOEVENT_SERVICE_MODE_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

BioEventReader - Class in de.julielab.jcore.reader.bionlpformat.main

BioEventReader() - Constructor for class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

C

close() - Method in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

close() - Method in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

close() - Method in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

D

de.julielab.jcore.reader.bionlpformat.main - package de.julielab.jcore.reader.bionlpformat.main

de.julielab.jcore.reader.bionlpformat.utils - package de.julielab.jcore.reader.bionlpformat.utils

DIRECTORY_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

DIRECTORY_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

DIRECTORY_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

F

FormatClashException - Exception in de.julielab.jcore.reader.bionlpformat.main

FormatClashException() - Constructor for exception de.julielab.jcore.reader.bionlpformat.main.FormatClashException

FormatClashException(String) - Constructor for exception de.julielab.jcore.reader.bionlpformat.main.FormatClashException

G

getNext(CAS) - Method in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

getNext(CAS) - Method in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

getNext(CAS) - Method in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

getNumCorefExpressions() - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

Returns the number coreference expressions mapped by this mapper at the time of the call.

getNumCorefRelations() - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

Returns the number of coreference relations mapped by this mapper at the time of the call.

getProgress() - Method in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

getProgress() - Method in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

getProgress() - Method in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

H

hasNext() - Method in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

hasNext() - Method in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

hasNext() - Method in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

I

initialize() - Method in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

initialize() - Method in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

initialize() - Method in class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

M

mapAbstractFile(String, String, BufferedReader, JCas) - Method in class de.julielab.jcore.reader.bionlpformat.utils.TextFileMapper

mapEventFile(BufferedReader, JCas) - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper_Med

mapEventFile(BufferedReader, JCas) - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper_Seg

mapEventFile(Map<String, Annotation>, BufferedReader, JCas) - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

mapProteinFile(BufferedReader, JCas) - Method in class de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

MedEventReader - Class in de.julielab.jcore.reader.bionlpformat.main

MedEventReader() - Constructor for class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

O

OntoFormatReader - Class in de.julielab.jcore.reader.bionlpformat.utils

OntoFormatReader() - Constructor for class de.julielab.jcore.reader.bionlpformat.utils.OntoFormatReader

P

PROTEIN_FILE_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.BioEventReader

R

readFile(File) - Method in class de.julielab.jcore.reader.bionlpformat.utils.OntoFormatReader

S

SegmentReader - Class in de.julielab.jcore.reader.bionlpformat.main

SegmentReader() - Constructor for class de.julielab.jcore.reader.bionlpformat.main.SegmentReader

T

TEXT_FILE_PARAM - Static variable in class de.julielab.jcore.reader.bionlpformat.main.MedEventReader

TextFileMapper - Class in de.julielab.jcore.reader.bionlpformat.utils

TextFileMapper() - Constructor for class de.julielab.jcore.reader.bionlpformat.utils.TextFileMapper

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