Package de.julielab.jcore.reader.bionlpformat.utils

Class AnnotationFileMapper

java.lang.Object

de.julielab.jcore.reader.bionlpformat.utils.AnnotationFileMapper

public class AnnotationFileMapper
extends Object

//TODO describe purpose of class

Author:

buyko

Constructor Summary

Constructors

Constructor	Description
AnnotationFileMapper()

Method Summary

Modifier and Type	Method	Description
int	getNumCorefExpressions()	Returns the number coreference expressions mapped by this mapper at the time of the call.
int	getNumCorefRelations()	Returns the number of coreference relations mapped by this mapper at the time of the call.
void	mapEventFile(Map<String,Annotation> mappedProteins, BufferedReader bufferedReader, org.apache.uima.jcas.JCas cas)
Map<String,Annotation>	mapProteinFile(BufferedReader bufferedReader, org.apache.uima.jcas.JCas cas)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnnotationFileMapper

public AnnotationFileMapper()

Method Detail

mapEventFile

public void mapEventFile(Map<String,Annotation> mappedProteins,
                         BufferedReader bufferedReader,
                         org.apache.uima.jcas.JCas cas)
                  throws IOException

Throws:

IOException

mapProteinFile

public Map<String,Annotation> mapProteinFile(BufferedReader bufferedReader,
                                                   org.apache.uima.jcas.JCas cas)
                                            throws IOException

Throws:

IOException

getNumCorefRelations

public int getNumCorefRelations()

Returns the number of coreference relations mapped by this mapper at the time of the call.

Returns:

getNumCorefExpressions

public int getNumCorefExpressions()

Returns the number coreference expressions mapped by this mapper at the time of the call.

Returns: