Package banner.tagging.pipe

Class ProteinSymbols

java.lang.Object

cc.mallet.pipe.Pipe

banner.tagging.pipe.ProteinSymbols

All Implemented Interfaces:

cc.mallet.types.AlphabetCarrying, Serializable

public class ProteinSymbols
extends cc.mallet.pipe.Pipe

Taken from GNormPlus code: Wei, C. H., Kao, H. Y., & Lu, Z. (2015). GNormPlus: An Integrative Approach for Tagging Genes, Gene Families, and Protein Domains. BioMed Research International, 2015. https://doi.org/10.1155/2015/918710

Author:

faessler

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
ProteinSymbols(String prefix)

Method Summary

Modifier and Type	Method	Description
cc.mallet.types.Instance	pipe(cc.mallet.types.Instance inst)

Methods inherited from class cc.mallet.pipe.Pipe

alphabetsMatch, getAlphabet, getAlphabets, getDataAlphabet, getInstanceId, getTargetAlphabet, instanceFrom, instancesFrom, instancesFrom, isDataAlphabetSet, isTargetProcessing, newIteratorFrom, preceedingPipeDataAlphabetNotification, preceedingPipeTargetAlphabetNotification, precondition, readResolve, setDataAlphabet, setOrCheckDataAlphabet, setOrCheckTargetAlphabet, setTargetAlphabet, setTargetProcessing

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ProteinSymbols

public ProteinSymbols(String prefix)

Method Detail

pipe

public cc.mallet.types.Instance pipe(cc.mallet.types.Instance inst)

Overrides:

pipe in class cc.mallet.pipe.Pipe