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A

AcronymAnnotator - Class in de.julielab.jcore.ae.acronymtagger.main

Finds fullforms for acronyms using the Schwartz/Hearst algorithm if no fullform was found, then the acronym can be looked in an -->AcronymList

AcronymAnnotator() - Constructor for class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

AcronymEntry - Class in de.julielab.jcore.ae.acronymtagger.entries

a part of an Acronym: an Acronym contains shortform + AcronymEntry an AcronymEntry contains all fullforms to the shortform plus information about them (information is saved in a FullformEntry)

AcronymEntry(String) - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

adds only a fullform (no further information) to the internal fullformList

AcronymEntry(String, int, Set<String>, Set<String>) - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

adds a fullform with all information to the internal fullformList

AcronymEntry(String, FullformEntry) - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

adds a fullform with all information in the FullformEntry to the internal fullformList

addFullform(String, FullformEntry) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

C

consistencyAnnotate(JCas) - Method in class de.julielab.jcore.ae.acronymtagger.main.ConsistencyAnnotator

loops over document and adds the full form (expanded form) to all strings that have previously been recognized as an acronym.

ConsistencyAnnotator - Class in de.julielab.jcore.ae.acronymtagger.main

TODO insert description

ConsistencyAnnotator() - Constructor for class de.julielab.jcore.ae.acronymtagger.main.ConsistencyAnnotator

count - Variable in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

D

de.julielab.jcore.ae.acronymtagger.entries - package de.julielab.jcore.ae.acronymtagger.entries

de.julielab.jcore.ae.acronymtagger.main - package de.julielab.jcore.ae.acronymtagger.main

doPostprocessing(JCas) - Static method in class de.julielab.jcore.ae.acronymtagger.main.Postprocessing

F

FullformEntry - Class in de.julielab.jcore.ae.acronymtagger.entries

a FullformEntry contains earliest year and count of the fullform plus meshTerms of the document where it was seen in last change: now the fullform-string is completely normalized and the FullformEntry contains an additional list (a java Set) of all unnormalized fullforms

FullformEntry() - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

trivial constructor

FullformEntry(int, int, Set<String>, Set<String>) - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

constructor for creating a FullformEntry, specifying all information

FullformEntry(int, Set<String>, Set<String>) - Constructor for class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

constructor for creating a complete new FullformEntry seen ONCE now (count = 1)

G

getAllFullforms() - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

getHTMLString(boolean) - Method in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

getHTMLString(String, boolean) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

returns a html representation of this entry for including it in a table.

getString() - Method in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

getString(String) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

returns a formatted String containing all information of the AcronymEntry format is Short Full_1 Year_1 MeshList_1 # Unnormalized Fullforms_1 Short Full_2 Year_2 MeshList_2 # Unnormalized Fullforms_2 ...

H

hasfullform(String) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

I

initialize(UimaContext) - Method in class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

M

merge(String, String) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

This method treads the second parameter as a variation of of the FullformEntry connected to the first parameter.

meshTerms - Variable in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

P

PARAM_ACROLIST - Static variable in class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

PARAM_CONSISTENCY_ANNO - Static variable in class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

PARAM_MAXLENGTH_FACTOR - Static variable in class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

Postprocessing - Class in de.julielab.jcore.ae.acronymtagger.main

Postprocessing() - Constructor for class de.julielab.jcore.ae.acronymtagger.main.Postprocessing

process(JCas) - Method in class de.julielab.jcore.ae.acronymtagger.main.AcronymAnnotator

R

remove(String) - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

removes the fullform entry defined by the String

S

size() - Method in class de.julielab.jcore.ae.acronymtagger.entries.AcronymEntry

U

unnormalizedForms - Variable in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

Y

year - Variable in class de.julielab.jcore.ae.acronymtagger.entries.FullformEntry

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