Uses of Class
de.julielab.jules.ae.genemapping.utils.GeneMappingException

Packages that use GeneMappingException

Package	Description
de.julielab.jules.ae.genemapping
de.julielab.jules.ae.genemapping.disambig
de.julielab.jules.ae.genemapping.genemodel
de.julielab.jules.ae.genemapping.mappingcores
de.julielab.jules.ae.genemapping.utils

Uses of GeneMappingException in de.julielab.jules.ae.genemapping

Methods in de.julielab.jules.ae.genemapping that throw GeneMappingException

Modifier and Type	Method	Description
DocumentMappingResult	GeneMapping.map(GeneDocument document)
MentionMappingResult	GeneMapping.map(GeneMention searchTerm, org.apache.lucene.search.BooleanQuery contextQuery, java.lang.String documentContext)	Actual mapping method.
java.util.List<SynHit>	GeneMapping.map(java.lang.String searchTerm, org.apache.lucene.search.BooleanQuery contextQuery)	A wrapper to the main mapping function.
MentionMappingResult	GeneMapping.map(java.lang.String term, org.apache.lucene.search.BooleanQuery contextQuery, java.lang.String documentContext)	Convenience method mostly used for tests.
Scorer	LuceneCandidateRetrieval.setScorerType(int type)

Constructors in de.julielab.jules.ae.genemapping that throw GeneMappingException

Constructor	Description
GeneMapping(GeneMappingConfiguration configuration)
GeneMapping(java.io.File propertiesFile)	Main constructor for the GeneMapper reading especially properties information.
LuceneCandidateRetrieval(GeneMappingConfiguration config)

Uses of GeneMappingException in de.julielab.jules.ae.genemapping.disambig

Methods in de.julielab.jules.ae.genemapping.disambig that throw GeneMappingException

Modifier and Type	Method	Description
DocumentMappingResult	SemanticDisambiguation.disambiguateDocument(DocumentDisambiguationData disambiguationData)
DocumentMappingResult	WeepingTreeDisambiguation.disambiguateDocument(DocumentDisambiguationData disambiguationData)
MentionMappingResult	SemanticDisambiguation.disambiguateMention(MentionDisambiguationData disambiguationData)
MentionMappingResult	WeepingTreeDisambiguation.disambiguateMention(MentionDisambiguationData disambiguationData)

Constructors in de.julielab.jules.ae.genemapping.disambig that throw GeneMappingException

Constructor	Description
ContextItemsIndex(GeneMappingConfiguration configuration)
WeepingTreeDisambiguation(GeneMappingConfiguration configuration)

Uses of GeneMappingException in de.julielab.jules.ae.genemapping.genemodel

Methods in de.julielab.jules.ae.genemapping.genemodel that throw GeneMappingException

Modifier and Type	Method	Description
static void	GeneDocumentFactory.initialize(GeneMapping mapper)

Uses of GeneMappingException in de.julielab.jules.ae.genemapping.mappingcores

Methods in de.julielab.jules.ae.genemapping.mappingcores that throw GeneMappingException

Modifier and Type	Method	Description
DocumentMappingResult	MappingCore.map(GeneDocument document)
MentionMappingResult	MappingCore.map(GeneMention geneMention)
DocumentMappingResult	WeepingTreeMappingCore.map(GeneDocument document)
MentionMappingResult	WeepingTreeMappingCore.map(GeneMention geneMention)

Constructors in de.julielab.jules.ae.genemapping.mappingcores that throw GeneMappingException

Constructor	Description
WeepingTreeMappingCore(GeneMappingConfiguration configuration)

Uses of GeneMappingException in de.julielab.jules.ae.genemapping.utils

Subclasses of GeneMappingException in de.julielab.jules.ae.genemapping.utils

Modifier and Type	Class	Description
class	GeneCandidateRetrievalException