Package de.julielab.jules.ae.genemapping.index

Class SynonymIndexFieldNames

  • public class SynonymIndexFieldNames
extends java.lang.Object

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static java.lang.String FILTERED
      A boolean-numerical (0 or 1) value to indicate whether the value was recognized as being unspecific or otherwise non-helpful.
      static java.lang.String ID_FIELD  
      static java.lang.String ID_FIELD_LEGACY  
      static java.lang.String LOOKUP_SYN_FIELD
      The index field name for the normalized gene / protein name.
      static java.lang.String ORIGINAL_NAME
      The index field name for the original, unnormalized (however, lower-cased) gene / protein name.
      static java.lang.String PRIORITY
      A numerical priority where 1 is the highest priority.
      static java.lang.String STEMMED_NORMALIZED_NAME
      The index field name for the normalized and then token-wise stemmed gene / protein name.
      static java.lang.String TAX_ID_FIELD  
      static java.lang.String VARIANT_NAME
      The index field name for the normalized variant of the original gene / protein name.

    • Method Summary

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • LOOKUP_SYN_FIELD

        public static final java.lang.String LOOKUP_SYN_FIELD
        The index field name for the normalized gene / protein name.
        See Also:
        Constant Field Values

      • ORIGINAL_NAME

        public static final java.lang.String ORIGINAL_NAME
        The index field name for the original, unnormalized (however, lower-cased) gene / protein name.
        See Also:
        Constant Field Values

      • VARIANT_NAME

        public static final java.lang.String VARIANT_NAME
        The index field name for the normalized variant of the original gene / protein name.
        See Also:
        Constant Field Values

      • STEMMED_NORMALIZED_NAME

        public static final java.lang.String STEMMED_NORMALIZED_NAME
        The index field name for the normalized and then token-wise stemmed gene / protein name.
        See Also:
        Constant Field Values

      • PRIORITY

        public static final java.lang.String PRIORITY
        A numerical priority where 1 is the highest priority. The highest priority is given to official symbols, preferred names etc.
        See Also:
        Constant Field Values

      • FILTERED

        public static final java.lang.String FILTERED
        A boolean-numerical (0 or 1) value to indicate whether the value was recognized as being unspecific or otherwise non-helpful. For experimental purposes, these items are kept in the index with this flag set to 1.
        See Also:
        Constant Field Values

    • Constructor Detail

      • SynonymIndexFieldNames

        public SynonymIndexFieldNames()