ContextGenerator (Gene Mapping 1.0.1 API)

java.lang.Object
- de.julielab.jules.ae.genemapping.index.ContextGenerator

public class ContextGenerator
extends java.lang.Object

Constructor Summary

Constructors
Constructor	Description
`ContextGenerator(java.lang.String resourcesDir, java.lang.String db)`	constructor which creates semantic context index in the specified directory on the disk file paths are hard-coded due to size issues

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

java.lang.String getContext(java.lang.String id)
Builds the semantic context for a given Gene ID
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ContextGenerator
```
public ContextGenerator(java.lang.String resourcesDir,
                        java.lang.String db)
                 throws java.io.FileNotFoundException,
                        java.io.IOException
```
    constructor which creates semantic context index in the specified directory on the disk file paths are hard-coded due to size issues
    
    Parameters:
    
    resourcesDir - path to resources directory
    
    db - type of id (i.e. either "gene" or "protein")
    
    Throws:
    
    java.io.FileNotFoundException
    
    java.io.IOException
- Method Detail
  - getContext
```
public java.lang.String getContext(java.lang.String id)
```
    Builds the semantic context for a given Gene ID
    
    Parameters:
    
    id - - the gene id for which the semantic context is to be returned
    
    Returns:
    
    the semantic context