Uses of Class
de.julielab.jules.ae.genemapping.genemodel.SpeciesMention
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Packages that use SpeciesMention Package Description de.julielab.jules.ae.genemapping.genemodel -
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Uses of SpeciesMention in de.julielab.jules.ae.genemapping.genemodel
Methods in de.julielab.jules.ae.genemapping.genemodel that return types with arguments of type SpeciesMention Modifier and Type Method Description java.util.Map.Entry<org.apache.commons.lang3.Range<java.lang.Integer>,SpeciesMention>GeneDocument. getNearestNextSpeciesMention(org.apache.commons.lang3.Range<java.lang.Integer> range, java.lang.String taxId)java.util.Map.Entry<org.apache.commons.lang3.Range<java.lang.Integer>,SpeciesMention>GeneDocument. getNearestPreviousSpeciesMention(org.apache.commons.lang3.Range<java.lang.Integer> range, java.lang.String taxId)de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention>SpeciesCandidates. getTextCandidates()de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention>SpeciesCandidates. getTitleCandidates()Method parameters in de.julielab.jules.ae.genemapping.genemodel with type arguments of type SpeciesMention Modifier and Type Method Description voidSpeciesCandidates. setTextCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)voidSpeciesCandidates. setTitleCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates)Constructor parameters in de.julielab.jules.ae.genemapping.genemodel with type arguments of type SpeciesMention Constructor Description SpeciesCandidates(int titleBegin, int titleEnd, java.util.Set<java.lang.String> meshCandidates, de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)If the textCandidates include species mentions for the title, this constructor will automatically derive the title species IDs.SpeciesCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates, java.util.Set<java.lang.String> meshCandidates, de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)
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