Uses of Class
de.julielab.jules.ae.genemapping.genemodel.GeneSpeciesOccurrence
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Packages that use GeneSpeciesOccurrence Package Description de.julielab.jules.ae.genemapping.genemodel -
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Uses of GeneSpeciesOccurrence in de.julielab.jules.ae.genemapping.genemodel
Methods in de.julielab.jules.ae.genemapping.genemodel that return GeneSpeciesOccurrence Modifier and Type Method Description GeneSpeciesOccurrenceGeneMention. getTaxonomyReliability()static GeneSpeciesOccurrenceGeneSpeciesOccurrence. valueOf(java.lang.String name)Returns the enum constant of this type with the specified name.static GeneSpeciesOccurrence[]GeneSpeciesOccurrence. values()Returns an array containing the constants of this enum type, in the order they are declared.Methods in de.julielab.jules.ae.genemapping.genemodel that return types with arguments of type GeneSpeciesOccurrence Modifier and Type Method Description com.google.common.collect.Multimap<java.lang.String,GeneSpeciesOccurrence>GeneMention. getTaxonomyCandidates()com.google.common.collect.Multimap<java.lang.String,GeneSpeciesOccurrence>GeneDocument. setSpeciesHints(GeneMention gm)This will try to map genes to species using a multi-stage procedure as detailed in "Inter-species normalization of gene mentions with GNAT" by Hakenberg et al.Methods in de.julielab.jules.ae.genemapping.genemodel with parameters of type GeneSpeciesOccurrence Modifier and Type Method Description voidGeneMention. setTaxonomyReliability(GeneSpeciesOccurrence taxonomyReliability)Method parameters in de.julielab.jules.ae.genemapping.genemodel with type arguments of type GeneSpeciesOccurrence Modifier and Type Method Description voidGeneMention. setTaxonomyCandidates(com.google.common.collect.Multimap<java.lang.String,GeneSpeciesOccurrence> taxonomyCandidates)
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