Uses of Class
de.julielab.jules.ae.genemapping.genemodel.GeneName

Packages that use GeneName

Package	Description
de.julielab.jules.ae.genemapping
de.julielab.jules.ae.genemapping.genemodel

Uses of GeneName in de.julielab.jules.ae.genemapping

Fields in de.julielab.jules.ae.genemapping declared as GeneName

Modifier and Type	Field	Description
GeneName	CandidateCacheKey.geneName

Methods in de.julielab.jules.ae.genemapping that return GeneName

Modifier and Type	Method	Description
GeneName	SynHit.getMappedGeneName()

Methods in de.julielab.jules.ae.genemapping with parameters of type GeneName

Modifier and Type	Method	Description
void	SynHit.setMappedGeneName(GeneName mappedGeneName)

Constructors in de.julielab.jules.ae.genemapping with parameters of type GeneName

Constructor	Description
CandidateCacheKey(GeneName geneName)	Gets gene candidates based only on the name making no restrictions on species.
CandidateCacheKey(GeneName geneName, java.lang.String taxId)	Gets gene candidates accordingi to geneName but restricted to species with taxonomy ID taxId.

Uses of GeneName in de.julielab.jules.ae.genemapping.genemodel

Methods in de.julielab.jules.ae.genemapping.genemodel that return GeneName

Modifier and Type	Method	Description
GeneName	GeneMention.getGeneName()