Uses of Class
de.julielab.jules.ae.genemapping.genemodel.GeneMention.GeneTagger

Packages that use GeneMention.GeneTagger

Package	Description
de.julielab.jules.ae.genemapping.genemodel

Uses of GeneMention.GeneTagger in de.julielab.jules.ae.genemapping.genemodel

Methods in de.julielab.jules.ae.genemapping.genemodel that return GeneMention.GeneTagger

Modifier and Type	Method	Description
GeneMention.GeneTagger	GeneMention.getTagger()
static GeneMention.GeneTagger	GeneMention.GeneTagger.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static GeneMention.GeneTagger[]	GeneMention.GeneTagger.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in de.julielab.jules.ae.genemapping.genemodel with parameters of type GeneMention.GeneTagger

Modifier and Type	Method	Description
void	GeneDocument.allowGeneMentionsByRegularExpression(GeneMention.GeneTagger tagger, java.util.regex.Pattern... regExes)	Adds gene mentions to the selected set of gene mentions based on a tagger (optional) and regular expressions matched on the mention string.
void	GeneDocument.selectGeneMentionsByTagger(GeneMention.GeneTagger... tagger)	Builds the internal gene offset map and only keeps gene mentions found by the given taggers.
void	GeneMention.setTagger(GeneMention.GeneTagger tagger)
void	GeneDocument.unifyAllGenesLongerFirst(GeneMention.GeneTagger... taggers)
void	GeneDocument.unifyGeneMentionsAtEqualOffsets(GeneMention.GeneTagger... taggerPriorities)	Creates the internal gene map without allowing exact duplicate ranges where begin and end are equal but still allows overlapping.
void	GeneDocument.unifyGenesPrioritizeTagger(java.util.NavigableSet<GeneMention> sortedGenes, GeneMention.GeneTagger tagger)