Uses of Class
de.julielab.jules.ae.genemapping.genemodel.GeneDocument

Packages that use GeneDocument

Package	Description
de.julielab.jules.ae.genemapping
de.julielab.jules.ae.genemapping.disambig
de.julielab.jules.ae.genemapping.genemodel
de.julielab.jules.ae.genemapping.mappingcores

Uses of GeneDocument in de.julielab.jules.ae.genemapping

Methods in de.julielab.jules.ae.genemapping with parameters of type GeneDocument

Modifier and Type	Method	Description
DocumentMappingResult	GeneMapping.map(GeneDocument document)

Uses of GeneDocument in de.julielab.jules.ae.genemapping.disambig

Methods in de.julielab.jules.ae.genemapping.disambig that return GeneDocument

Modifier and Type	Method	Description
GeneDocument	DocumentDisambiguationData.getDocument()
GeneDocument	WeepingTreeDocumentDisambiguationData.getDocument()

Constructors in de.julielab.jules.ae.genemapping.disambig with parameters of type GeneDocument

Constructor	Description
WeepingTreeDocumentDisambiguationData(GeneDocument document, java.util.Set<java.lang.String> taxonomyIds)

Uses of GeneDocument in de.julielab.jules.ae.genemapping.genemodel

Methods in de.julielab.jules.ae.genemapping.genemodel that return GeneDocument

Modifier and Type	Method	Description
GeneDocument	GeneDocumentFactory.createGeneDocument(org.apache.uima.jcas.JCas jCas, java.util.Map<java.lang.String,java.util.regex.Matcher> entityMappingTypes, java.util.function.Function<de.julielab.jcore.types.EntityMention,org.apache.commons.lang3.tuple.Pair<java.lang.String,org.apache.lucene.search.BooleanQuery>> contextFun)	Creates a document by setting all required information from the jCas.
GeneDocument	GeneMention.getGeneDocument()

Methods in de.julielab.jules.ae.genemapping.genemodel with parameters of type GeneDocument

Modifier and Type	Method	Description
void	GeneMention.setGeneDocument(GeneDocument geneDocument)

Constructors in de.julielab.jules.ae.genemapping.genemodel with parameters of type GeneDocument

Constructor	Description
GeneDocument(GeneDocument template)	Copies the template document.

Uses of GeneDocument in de.julielab.jules.ae.genemapping.mappingcores

Methods in de.julielab.jules.ae.genemapping.mappingcores with parameters of type GeneDocument

Modifier and Type	Method	Description
DocumentMappingResult	MappingCore.map(GeneDocument document)
DocumentMappingResult	WeepingTreeMappingCore.map(GeneDocument document)