Package de.julielab.jules.ae.genemapping.genemodel

Class SpeciesCandidates

java.lang.Object

de.julielab.jules.ae.genemapping.genemodel.SpeciesCandidates

public class SpeciesCandidates
extends java.lang.Object

Constructor Summary

Constructors

Constructor	Description
SpeciesCandidates(int titleBegin, int titleEnd, java.util.Set<java.lang.String> meshCandidates, de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)	If the textCandidates include species mentions for the title, this constructor will automatically derive the title species IDs.
SpeciesCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates, java.util.Set<java.lang.String> meshCandidates, de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)

Method Summary

Modifier and Type	Method	Description
java.util.Set<java.lang.String>	getMeshCandidates()
de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention>	getTextCandidates()
de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention>	getTitleCandidates()
void	setMeshCandidates(java.util.Set<java.lang.String> meshCandidates)
void	setTextCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)
void	setTitleCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SpeciesCandidates

public SpeciesCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates,
                         java.util.Set<java.lang.String> meshCandidates,
                         de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)

SpeciesCandidates

public SpeciesCandidates(int titleBegin,
                         int titleEnd,
                         java.util.Set<java.lang.String> meshCandidates,
                         de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)

If the textCandidates include species mentions for the title, this constructor will automatically derive the title species IDs.

Parameters:

titleBegin -

titleEnd -

meshCandidates -

textCandidates -

Method Detail

getTitleCandidates

public de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> getTitleCandidates()

setTitleCandidates

public void setTitleCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> titleCandidates)

getMeshCandidates

public java.util.Set<java.lang.String> getMeshCandidates()

setMeshCandidates

public void setMeshCandidates(java.util.Set<java.lang.String> meshCandidates)

getTextCandidates

public de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> getTextCandidates()

setTextCandidates

public void setTextCandidates(de.julielab.java.utilities.spanutils.OffsetMap<SpeciesMention> textCandidates)