Package de.julielab.jules.ae.genemapping.disambig

Class WeepingTreeDisambiguation

java.lang.Object

de.julielab.jules.ae.genemapping.disambig.WeepingTreeDisambiguation

All Implemented Interfaces:

SemanticDisambiguation

public class WeepingTreeDisambiguation
extends java.lang.Object
implements SemanticDisambiguation

Some simple disambiguation steps for ambiguous synonyms, nothing majorly fancy. Prerequisites:

• All gene mentions have a MentionMappingResult
• The best candidate(s) of the MentionMappingResults apply to one of the given taxonomy IDs

Constructor Summary

Constructors

Constructor	Description
WeepingTreeDisambiguation(GeneMappingConfiguration configuration)

Method Summary

Modifier and Type	Method	Description
DocumentMappingResult	disambiguateDocument(DocumentDisambiguationData disambiguationData)
MentionMappingResult	disambiguateMention(MentionDisambiguationData disambiguationData)
SemanticIndex	getSemanticIndex()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

WeepingTreeDisambiguation

public WeepingTreeDisambiguation(GeneMappingConfiguration configuration)
                          throws GeneMappingException

Throws:

GeneMappingException

Method Detail

disambiguateMention

public MentionMappingResult disambiguateMention(MentionDisambiguationData disambiguationData)
                                         throws GeneMappingException

Specified by:

disambiguateMention in interface SemanticDisambiguation

Throws:

GeneMappingException

disambiguateDocument

public DocumentMappingResult disambiguateDocument(DocumentDisambiguationData disambiguationData)
                                           throws GeneMappingException

Specified by:

disambiguateDocument in interface SemanticDisambiguation

Throws:

GeneMappingException

getSemanticIndex

public SemanticIndex getSemanticIndex()

Specified by:

getSemanticIndex in interface SemanticDisambiguation