Package de.julielab.jules.ae.genemapping.disambig

Class ContextItemsIndex

java.lang.Object

de.julielab.jules.ae.genemapping.disambig.ContextItemsIndex

All Implemented Interfaces:

SemanticIndex

public class ContextItemsIndex
extends java.lang.Object
implements SemanticIndex

Field Summary

Fields

Modifier and Type	Field	Description
org.apache.lucene.search.IndexSearcher	searcher

Constructor Summary

Constructors

Constructor	Description
ContextItemsIndex(GeneMappingConfiguration configuration)

Method Summary

Modifier and Type	Method	Description
java.util.Collection<java.lang.String>	getContextItems(ContextItemsCacheKey key)
java.util.Collection<java.lang.String>	getContextItems(java.lang.String geneId, java.lang.String field)
org.apache.lucene.search.IndexSearcher	getContextItemsSearcher()
java.util.Map<java.lang.String,java.lang.Float>	getSynonymRefSeqScoresForTaxIds(SynHit synHit, java.util.Set<java.lang.String> taxonomyIds)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

searcher

public org.apache.lucene.search.IndexSearcher searcher

Constructor Detail

ContextItemsIndex

public ContextItemsIndex(GeneMappingConfiguration configuration)
                  throws GeneMappingException

Throws:

GeneMappingException

Method Detail

getContextItems

public java.util.Collection<java.lang.String> getContextItems(ContextItemsCacheKey key)
                                                       throws java.util.concurrent.ExecutionException

Throws:

java.util.concurrent.ExecutionException

getContextItems

public java.util.Collection<java.lang.String> getContextItems(java.lang.String geneId,
                                                              java.lang.String field)
                                                       throws java.util.concurrent.ExecutionException

Throws:

java.util.concurrent.ExecutionException

getSynonymRefSeqScoresForTaxIds

public java.util.Map<java.lang.String,java.lang.Float> getSynonymRefSeqScoresForTaxIds(SynHit synHit,
                                                                                             java.util.Set<java.lang.String> taxonomyIds)
                                                                                      throws java.io.IOException

Parameters:

synHit -

Returns:

Throws:

java.io.IOException

getContextItemsSearcher

public org.apache.lucene.search.IndexSearcher getContextItemsSearcher()