Package de.julielab.jules.ae.genemapping

Class MentionMappingResult.RejectionSynHit

java.lang.Object

de.julielab.jules.ae.genemapping.SynHit

de.julielab.jules.ae.genemapping.MentionMappingResult.RejectionSynHit

All Implemented Interfaces:

java.lang.Cloneable, java.lang.Comparable<SynHit>

Enclosing class:

MentionMappingResult

public static class MentionMappingResult.RejectionSynHit
extends SynHit

Nested Class Summary

Nested classes/interfaces inherited from class de.julielab.jules.ae.genemapping.SynHit

SynHit.CompareType

Method Summary

Modifier and Type	Method	Description
java.lang.String	getMappedMention()	The potentially normalized and/or transformed original entity text mention for which this candidate has been retrieved.
double	getMentionScore()
java.lang.String	getSource()
java.lang.String	getSynonym()
java.util.List<java.lang.String>	getTaxIds()
boolean	isExactMatch()

Methods inherited from class de.julielab.jules.ae.genemapping.SynHit

clone, compareTo, getCompareType, getGeneIdsOfTaxId, getId, getIds, getMappedGeneName, getOverallScore, getPrioritiesOfIds, getPrioritiesOfIds, getSemanticScore, getSpeciesMentionScore, getSpeciesMentionScores, getSynonymPriorities, getSynonymPriority, getTaxId, getTaxonomySpecificIds, hasTaxId, isAmbiguousInGeneral, isDisambiguated, isInterSpeciesAmbiguousInGeneral, isIntraSpeciesAmbiguousInGeneral, restrictToTaxId, setCompareType, setId, setIds, setMappedGeneName, setMappedMention, setMentionScore, setOverallScore, setSemanticScore, setSource, setSpeciesMentionScore, setSynonym, setSynonymPriorities, setTaxId, setTaxIds, toString

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

getMentionScore

public double getMentionScore()

Overrides:

getMentionScore in class SynHit

Returns:

getSynonym

public java.lang.String getSynonym()

Overrides:

getSynonym in class SynHit

getSource

public java.lang.String getSource()

Overrides:

getSource in class SynHit

getMappedMention

public java.lang.String getMappedMention()

Description copied from class: SynHit

The potentially normalized and/or transformed original entity text mention for which this candidate has been retrieved.

Overrides:

getMappedMention in class SynHit

Returns:

The string-normalized entity name that this candidate was matched to.

isExactMatch

public boolean isExactMatch()

Overrides:

isExactMatch in class SynHit

getTaxIds

public java.util.List<java.lang.String> getTaxIds()

Overrides:

getTaxIds in class SynHit